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  5. Dac_g15392

Dac_g15392


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g15392

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00095620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Adi_g025472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057577 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Adi_g076600 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g10988 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g32108 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g01648 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g30442 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0031.g024472 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g11144 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17095 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.22G024900.1 Ceric.22G024900 GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Dcu_g43319 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01023401001 No alias Nutrient uptake.phosphorus assimilation.phosphate... 0.01 OrthoFinder output from all 47 species
LOC_Os05g40960.1 LOC_Os05g40960 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os08g25820.2 LOC_Os08g25820 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g13527 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g02992 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
MA_93883g0010 PHL1 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g24104 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Nbi_g00872 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07407 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05575 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003614 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g49883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49915 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g04247 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Spa_g09882 PHL1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g22319 No alias GARP subgroup PHL transcription factor & original... 0.01 OrthoFinder output from all 47 species
Spa_g29568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56754 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g08951 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 232 282
IPR025756 Myb_CC_LHEQLE 313 360
No external refs found!