Dac_g10899

Description : component *(bS20c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006775 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006775_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g10899

Target	Alias	Description	ECC score	Gene Family Method
AT3G15190	No alias	chloroplast 30S ribosomal protein S20, putative	0.03	OrthoFinder output from all 47 species
Aev_g22835	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ala_g08893	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Aob_g06235	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g03027	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0228.g059056	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cba_g11240	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.11G009600.1	Ceric.11G009600	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cre12.g494750	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Dcu_g37258	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ehy_g11872	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01014290001	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Gb_27504	No alias	component psRPS20 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g48690.1	LOC_Os01g48690	component psRPS20 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Len_g00203	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g00868	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_872747g0010	No alias	component psRPS20 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Mp7g14740.1	No alias	component psRPS20 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Ore_g04849	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g10569	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009139	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g20147	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc07g062870.3.1	Solyc07g062870	component psRPS20 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Spa_g08226	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Spa_g08227	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Spa_g50703	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Tin_g10912	No alias	component *(bS20c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Zm00001e028066_P001	Zm00001e028066	component psRPS20 of small ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004820	glycine-tRNA ligase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002583	Ribosomal_S20	76	162

External Links

No external refs found!

Dac_g10899

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation