Solyc12g019860.2.1 (Solyc12g019860)

Aliases : Solyc12g019860

Description : component NOT3/5 of mRNA deadenylation CCR4-NOT complex

Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g019860.2.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00093740	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.06	OrthoFinder output from all 47 species
AMTR_s00012p00217710	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.06	OrthoFinder output from all 47 species
Adi_g021088	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Aev_g14080	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Ala_g02487	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Aop_g00795	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Aspi01Gene22866.t1	Aspi01Gene22866	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031433	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Ceric.09G054000.1	Ceric.09G054000	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.119	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.02	OrthoFinder output from all 47 species
Cre04.g227350	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g13304	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
GSVIVT01033382001	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.08	OrthoFinder output from all 47 species
LOC_Os03g44900.1	LOC_Os03g44900	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.08	OrthoFinder output from all 47 species
Len_g47292	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Lfl_g02194	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.08	OrthoFinder output from all 47 species
MA_10429335g0020	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp5g06180.1	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species
Msp_g10519	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ore_g18536	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Sam_g09716	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Tin_g05223	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Zm00001e005243_P002	Zm00001e005243	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.03	OrthoFinder output from all 47 species
Zm00001e012376_P003	Zm00001e012376	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003714	transcription corepressor activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	HCCA
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	705	842
IPR007207	Not_N	4	236

External Links

No external refs found!

Solyc12g019860.2.1 (Solyc12g019860)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation