1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g042640.2.1

Solyc11g042640.2.1 (Solyc11g042640)


Aliases : Solyc11g042640

Description : Psb33 protein involved in PS-II assembly


Gene families : OG0003633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003633_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g042640.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00029990 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.15 OrthoFinder output from all 47 species
AT1G71500 No alias Rieske (2Fe-2S) domain-containing protein 0.18 OrthoFinder output from all 47 species
Adi_g025805 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Aev_g09772 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Ala_g01051 No alias protein involved in PS-II assembly *(Psb33) & original... 0.11 OrthoFinder output from all 47 species
Ala_g12430 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Als_g08451 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Als_g11770 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
Aob_g00988 No alias protein involved in PS-II assembly *(Psb33) & original... 0.11 OrthoFinder output from all 47 species
Aop_g06553 No alias protein involved in PS-II assembly *(Psb33) & original... 0.1 OrthoFinder output from all 47 species
Aspi01Gene15023.t1 Aspi01Gene15023 protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0140.g051300 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0212.g058145 No alias protein involved in PS-II assembly *(Psb33) & original... 0.05 OrthoFinder output from all 47 species
Cba_g22702 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Ceric.16G079700.1 Ceric.16G079700 protein involved in PS-II assembly *(Psb33) & original... 0.22 OrthoFinder output from all 47 species
Cre09.g411200 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Dac_g07653 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g20317 No alias protein involved in PS-II assembly *(Psb33) & original... 0.12 OrthoFinder output from all 47 species
Dde_g09027 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g15961 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
GSVIVT01036428001 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Gb_17341 No alias Psb33 protein involved in PS-II assembly 0.09 OrthoFinder output from all 47 species
LOC_Os11g13850.2 LOC_Os11g13850 Psb33 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Len_g00495 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Len_g01078 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Lfl_g02682 No alias protein involved in PS-II assembly *(Psb33) & original... 0.13 OrthoFinder output from all 47 species
Lfl_g19856 No alias protein involved in PS-II assembly *(Psb33) & original... 0.08 OrthoFinder output from all 47 species
Lfl_g19857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g07060.1 No alias Psb33 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Msp_g04633 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g07139 No alias protein involved in PS-II assembly *(Psb33) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g08638 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Ore_g30344 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Pir_g11115 No alias protein involved in PS-II assembly *(Psb33) & original... 0.1 OrthoFinder output from all 47 species
Pnu_g01988 No alias protein involved in PS-II assembly *(Psb33) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g01970 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g30084 No alias protein involved in PS-II assembly *(Psb33) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007893 No alias protein involved in PS-II assembly *(Psb33) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014902 No alias protein involved in PS-II assembly *(Psb33) & original... 0.05 OrthoFinder output from all 47 species
Sam_g08540 No alias protein involved in PS-II assembly *(Psb33) & original... 0.07 OrthoFinder output from all 47 species
Sam_g49855 No alias protein involved in PS-II assembly *(Psb33) & original... 0.02 OrthoFinder output from all 47 species
Spa_g09786 No alias protein involved in PS-II assembly *(Psb33) & original... 0.09 OrthoFinder output from all 47 species
Tin_g01591 No alias protein involved in PS-II assembly *(Psb33) & original... 0.11 OrthoFinder output from all 47 species
Zm00001e018788_P001 Zm00001e018788 Psb33 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR012748 Rieske-like_NirD 70 182
No external refs found!