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  5. Solyc06g071790.3.1

Solyc06g071790.3.1 (ATRAB8D, ATRABE1B,...)


Aliases : ATRAB8D, ATRABE1B, RABE1b, Solyc06g071790

Description : EF-Tu translation elongation factor


Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071790.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00227880 ATRAB8D,... Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
AT4G20360 ATRAB8D, ATRABE1B, RABE1b RAB GTPase homolog E1B 0.2 OrthoFinder output from all 47 species
Adi_g075285 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Aev_g21041 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.1 OrthoFinder output from all 47 species
Aev_g27656 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04793 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Als_g08146 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.11 OrthoFinder output from all 47 species
Als_g08147 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Als_g09356 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.1 OrthoFinder output from all 47 species
Als_g23756 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.09 OrthoFinder output from all 47 species
Als_g62452 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Aob_g15070 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Aop_g10494 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Aop_g25435 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene10728.t1 ATRAB8D,... translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22120.t1 ATRAB8D,... translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene36272.t1 ATRAB8D,... translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0292.g063375 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Cba_g06908 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.08 OrthoFinder output from all 47 species
Cba_g22191 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Cba_g70878 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.1 OrthoFinder output from all 47 species
Ceric.10G078000.1 ATRAB8D,... translation elongation factor *(EF-Tu) & original... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.40 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Dac_g02773 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Dac_g08520 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g08765 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Dde_g18792 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.08 OrthoFinder output from all 47 species
Ehy_g09796 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01007638001 ATRAB8D, ATRABE1B, RABE1b Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Gb_29040 ATRAB8D, ATRABE1B, RABE1b EF-Tu translation elongation factor 0.11 OrthoFinder output from all 47 species
LOC_Os02g38210.1 ATRAB8D,... EF-Tu translation elongation factor 0.14 OrthoFinder output from all 47 species
Len_g22333 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.13 OrthoFinder output from all 47 species
Len_g22334 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Len_g31034 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Len_g39684 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.1 OrthoFinder output from all 47 species
Len_g41947 ATRAB8D, ATRABE1B, RABE1b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06070 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
MA_942991g0010 ATRAB8D, ATRABE1B, RABE1b EF-Tu translation elongation factor 0.07 OrthoFinder output from all 47 species
Mp1g03870.1 ATRAB8D, ATRABE1B, RABE1b EF-Tu translation elongation factor 0.17 OrthoFinder output from all 47 species
Msp_g11454 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.09 OrthoFinder output from all 47 species
Nbi_g01170 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g13791 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Nbi_g14071 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Pir_g05476 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g24392 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.08 OrthoFinder output from all 47 species
Pnu_g24394 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g34741 ATRAB8D, ATRABE1B, RABE1b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015523 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Sam_g07638 No alias translation elongation factor *(EF-Tu) & original... 0.06 OrthoFinder output from all 47 species
Smo233481 ATRAB8D, ATRABE1B, RABE1b Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Spa_g10864 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Spa_g18775 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Spa_g22996 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Spa_g50677 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Tin_g05984 ATRAB8D, ATRABE1B, RABE1b translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e015008_P001 ATRAB8D,... EF-Tu translation elongation factor 0.04 OrthoFinder output from all 47 species
Zm00001e022880_P001 ATRAB8D,... EF-Tu translation elongation factor 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 316 384
IPR000795 T_Tr_GTP-bd_dom 119 281
IPR004160 Transl_elong_EFTu/EF1A_C 389 488
No external refs found!