1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_169369g0010

MA_169369g0010 (ATCPSF160, CPSF160)


Aliases : ATCPSF160, CPSF160

Description : Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana (sp|q9fgr0|cpsf1_arath : 329.0)


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_169369g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 ATCPSF160,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.02 OrthoFinder output from all 47 species
Adi_g021155 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ala_g19211 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ceric.05G035200.1 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Cre13.g573450 ATCPSF160, CPSF160 Probable cleavage and polyadenylation specificity factor... 0.01 OrthoFinder output from all 47 species
Dac_g14965 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Dde_g02994 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
GSVIVT01018506001 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Gb_25541 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os04g18010.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
MA_64261g0010 ATCPSF160, CPSF160 Probable cleavage and polyadenylation specificity factor... 0.04 OrthoFinder output from all 47 species
Ore_g06583 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Smo82277 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.08 OrthoFinder output from all 47 species
Solyc03g007100.3.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Spa_g06166 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Tin_g41718 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Zm00001e008515_P003 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!