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  5. Pp3c11_26710V3.1

Pp3c11_26710V3.1 (Pp3c11_26710)


Aliases : Pp3c11_26710

Description : ARM repeat superfamily protein


Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_26710V3.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT3G08943 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G53480 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g09011 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.01 OrthoFinder output from all 47 species
Aop_g19661 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01038575001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species
Mp6g11310.1 No alias IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Nbi_g30291 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.01 OrthoFinder output from all 47 species
Pir_g15801 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Smo124593 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species
Solyc03g082940.3.1 Solyc03g082940 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Solyc06g052030.3.1 Solyc06g052030 IMB1 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species
Zm00001e002934_P001 Zm00001e002934 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Zm00001e018172_P001 Zm00001e018172 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 23 102
No external refs found!