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  5. Mp2g23840.1

Mp2g23840.1 (NOP56)


Aliases : NOP56

Description : snoRNP scaffold component Nop56 of snoRNP rRNA methylation complex


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g23840.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 NOP56,... RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder output from all 47 species
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.14 OrthoFinder output from all 47 species
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 OrthoFinder output from all 47 species
Adi_g050304 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Als_g23085 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Aob_g12050 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Aop_g11428 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Aspi01Gene21355.t1 NOP56, Aspi01Gene21355 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Azfi_s0061.g034932 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Cba_g77651 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.16 OrthoFinder output from all 47 species
Dac_g14259 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Ehy_g06884 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
GSVIVT01008506001 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.1 OrthoFinder output from all 47 species
Gb_05243 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.08 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.09 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Lfl_g03084 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
MA_10395559g0010 No alias Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10434077g0010 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Nbi_g26532 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Ore_g37588 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.08 OrthoFinder output from all 47 species
Pp3c16_5220V3.1 NOP56, Pp3c16_5220 homolog of nucleolar protein NOP56 0.02 OrthoFinder output from all 47 species
Sam_g10672 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Smo167367 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder output from all 47 species
Solyc01g100570.4.1 NOP56, Solyc01g100570 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.17 OrthoFinder output from all 47 species
Spa_g48006 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Tin_g03400 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.1 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 2 67
IPR002687 Nop_dom 175 407
No external refs found!