- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : emb2746, Zm00001e025070
Description : exo-/endoribonuclease (RNase J)
Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e025070_P003 | |
| Cluster | HCCA: Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00241540 | emb2746,... | RNA processing.organelle machineries.ribonuclease... | 0.1 | OrthoFinder output from all 47 species | |
| AT5G63420 | emb2746 | RNA-metabolising metallo-beta-lactamase family protein | 0.17 | OrthoFinder output from all 47 species | |
| Ala_g32457 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Als_g22857 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g11224 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene13679.t1 | emb2746, Aspi01Gene13679 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0392.g067768 | emb2746 | exoribonuclease *(RNase J) & original description: CDS=108-2618 | 0.08 | OrthoFinder output from all 47 species | |
| Cba_g24290 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G090000.1 | emb2746, Ceric.02G090000 | exoribonuclease *(RNase J) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g22106 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01008515001 | emb2746 | Vesicle trafficking.target membrane tethering.DSL1... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_26634 | emb2746 | exo-/endoribonuclease (RNase J) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_29169 | emb2746 | exo-/endoribonuclease (RNase J) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g33610.1 | emb2746, LOC_Os02g33610 | exo-/endoribonuclease (RNase J) | 0.07 | OrthoFinder output from all 47 species | |
| Len_g08129 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_10429859g0010 | emb2746 | exo-/endoribonuclease (RNase J) | 0.08 | OrthoFinder output from all 47 species | |
| MA_10430099g0010 | emb2746 | no description available(sp|q84w56|rnj_arath : 150.0) | 0.06 | OrthoFinder output from all 47 species | |
| Mp3g10830.1 | emb2746 | exo-/endoribonuclease (RNase J) | 0.09 | OrthoFinder output from all 47 species | |
| Msp_g15010 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g21056 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25599 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g40893 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g04183 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c20_9790V3.1 | emb2746, Pp3c20_9790 | RNA-metabolising metallo-beta-lactamase family protein | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g25090 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012058 | emb2746 | exoribonuclease *(RNase J) & original description: CDS=64-2889 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g16311 | No alias | exoribonuclease *(RNase J) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g23289 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g111260.3.1 | emb2746, Solyc03g111260 | exo-/endoribonuclease (RNase J) | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g18551 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g22135 | emb2746 | exoribonuclease *(RNase J) & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0017038 | protein import | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| MF | GO:2001070 | starch binding | IEP | HCCA |
| No external refs found! |