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  5. Zm00001e024231_P001

Zm00001e024231_P001 (Zm00001e024231)


Aliases : Zm00001e024231

Description : glycine-tRNA ligase


Gene families : OG0004076 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024231_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G29880 No alias glycyl-tRNA synthetase / glycine--tRNA ligase 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000478.12 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000478.13 No alias Glycine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre05.g233800 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder output from all 47 species
GSVIVT01001092001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.07 OrthoFinder output from all 47 species
LOC_Os08g42560.1 LOC_Os08g42560 glycine-tRNA ligase 0.06 OrthoFinder output from all 47 species
Solyc11g039830.2.1 Solyc11g039830 glycine-tRNA ligase 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004154 Anticodon-bd 626 713
IPR002314 aa-tRNA-synt_IIb 301 526
IPR000738 WHEP-TRS_dom 65 105
No external refs found!