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  5. Zm00001e012200_P002

Zm00001e012200_P002 (Zm00001e012200)


Aliases : Zm00001e012200

Description : RNA editing factor (OZ-type)


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012200_P002
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.07 OrthoFinder output from all 47 species
Adi_g108029 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g05524 No alias RNA editing factor *(OZ) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g48039 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12859 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0014.g013544 No alias RNA editing factor *(OZ) & original description: CDS=1-2409 0.04 OrthoFinder output from all 47 species
Azfi_s0198.g057411 No alias RNA editing factor *(OZ) & original description: CDS=1-3054 0.04 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g22806 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02287 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18300 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
GSVIVT01014166001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_38905 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.12 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10428960g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_10436123g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.08 OrthoFinder output from all 47 species
Ore_g03681 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15553 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55843 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Smo426987 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc03g118680.3.1 Solyc03g118680 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 303 331
IPR001876 Znf_RanBP2 344 366
No external refs found!