Coexpression cluster: Cluster_59 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 44.8% (56/125) 1.46 0.0 0.0
GO:0090304 nucleic acid metabolic process 12.0% (15/125) 3.39 0.0 0.0
GO:1901363 heterocyclic compound binding 31.2% (39/125) 1.64 0.0 0.0
GO:0097159 organic cyclic compound binding 31.2% (39/125) 1.64 0.0 0.0
GO:0003676 nucleic acid binding 20.0% (25/125) 2.19 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 12.0% (15/125) 2.98 0.0 0.0
GO:0034660 ncRNA metabolic process 6.4% (8/125) 4.57 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 12.0% (15/125) 2.8 0.0 0.0
GO:0046483 heterocycle metabolic process 12.0% (15/125) 2.8 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 12.0% (15/125) 2.75 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 7.2% (9/125) 3.68 0.0 1e-06
GO:0003674 molecular_function 51.2% (64/125) 0.87 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 12.8% (16/125) 2.38 0.0 2e-06
GO:0016070 RNA metabolic process 8.0% (10/125) 3.24 0.0 2e-06
GO:0140101 catalytic activity, acting on a tRNA 4.8% (6/125) 4.61 0.0 3e-06
GO:0006399 tRNA metabolic process 4.8% (6/125) 4.54 0.0 4e-06
GO:0006520 amino acid metabolic process 5.6% (7/125) 3.97 0.0 6e-06
GO:0006418 tRNA aminoacylation for protein translation 4.0% (5/125) 5.06 0.0 6e-06
GO:0043039 tRNA aminoacylation 4.0% (5/125) 4.94 1e-06 7e-06
GO:0004812 aminoacyl-tRNA ligase activity 4.0% (5/125) 4.94 1e-06 7e-06
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.0% (5/125) 4.94 1e-06 7e-06
GO:0043038 amino acid activation 4.0% (5/125) 4.94 1e-06 7e-06
GO:0140098 catalytic activity, acting on RNA 5.6% (7/125) 3.88 1e-06 8e-06
GO:0032553 ribonucleotide binding 16.0% (20/125) 1.83 1e-06 9e-06
GO:0043168 anion binding 16.8% (21/125) 1.77 1e-06 1e-05
GO:0097367 carbohydrate derivative binding 16.0% (20/125) 1.82 1e-06 1e-05
GO:0035639 purine ribonucleoside triphosphate binding 15.2% (19/125) 1.85 1e-06 1.3e-05
GO:0036094 small molecule binding 16.8% (21/125) 1.71 2e-06 1.5e-05
GO:0000166 nucleotide binding 16.0% (20/125) 1.7 3e-06 2.7e-05
GO:1901265 nucleoside phosphate binding 16.0% (20/125) 1.7 3e-06 2.7e-05
GO:0032555 purine ribonucleotide binding 15.2% (19/125) 1.76 3e-06 2.9e-05
GO:0017076 purine nucleotide binding 15.2% (19/125) 1.69 6e-06 5.2e-05
GO:0006420 arginyl-tRNA aminoacylation 1.6% (2/125) 8.38 9e-06 7.1e-05
GO:0004814 arginine-tRNA ligase activity 1.6% (2/125) 8.38 9e-06 7.1e-05
GO:0005524 ATP binding 12.8% (16/125) 1.78 1.8e-05 0.000136
GO:0003723 RNA binding 5.6% (7/125) 3.08 2.2e-05 0.000149
GO:0006082 organic acid metabolic process 5.6% (7/125) 3.08 2.1e-05 0.00015
GO:0019752 carboxylic acid metabolic process 5.6% (7/125) 3.09 2.1e-05 0.00015
GO:0043436 oxoacid metabolic process 5.6% (7/125) 3.09 2.1e-05 0.00015
GO:0031369 translation initiation factor binding 1.6% (2/125) 7.79 2.7e-05 0.000181
GO:0016874 ligase activity 4.0% (5/125) 3.78 3.4e-05 0.000225
GO:0006259 DNA metabolic process 4.0% (5/125) 3.73 4e-05 0.00025
GO:0032559 adenyl ribonucleotide binding 12.8% (16/125) 1.68 3.9e-05 0.000251
GO:0044237 cellular metabolic process 17.6% (22/125) 1.33 5.2e-05 0.000317
GO:0006281 DNA repair 3.2% (4/125) 4.25 6.1e-05 0.000367
GO:0030554 adenyl nucleotide binding 12.8% (16/125) 1.61 7.2e-05 0.00042
GO:0043167 ion binding 18.4% (23/125) 1.26 7.3e-05 0.000421
GO:0051716 cellular response to stimulus 3.2% (4/125) 4.15 8e-05 0.000433
GO:0033554 cellular response to stress 3.2% (4/125) 4.15 8e-05 0.000433
GO:0006974 cellular response to DNA damage stimulus 3.2% (4/125) 4.15 8e-05 0.000433
GO:0032040 small-subunit processome 1.6% (2/125) 6.79 0.000133 0.000707
GO:0005515 protein binding 13.6% (17/125) 1.46 0.000151 0.000784
GO:0000049 tRNA binding 1.6% (2/125) 6.38 0.000248 0.001264
GO:0030684 preribosome 1.6% (2/125) 6.21 0.000318 0.001563
GO:0005852 eukaryotic translation initiation factor 3 complex 1.6% (2/125) 6.21 0.000318 0.001563
GO:0044281 small molecule metabolic process 5.6% (7/125) 2.42 0.000367 0.001767
GO:0009987 cellular process 20.8% (26/125) 1.0 0.000422 0.002001
GO:0034470 ncRNA processing 2.4% (3/125) 4.1 0.000725 0.003377
GO:0003678 DNA helicase activity 1.6% (2/125) 5.57 0.000797 0.003647
GO:0006396 RNA processing 3.2% (4/125) 3.2 0.000992 0.004464
GO:0005737 cytoplasm 2.4% (3/125) 3.88 0.001153 0.005103
GO:0006807 nitrogen compound metabolic process 15.2% (19/125) 1.11 0.001195 0.005205
GO:0008094 ATP-dependent activity, acting on DNA 1.6% (2/125) 5.06 0.001644 0.007047
GO:0008152 metabolic process 18.4% (23/125) 0.93 0.001868 0.007881
GO:0006413 translational initiation 1.6% (2/125) 4.85 0.002177 0.009042
GO:0006364 rRNA processing 1.6% (2/125) 4.73 0.002571 0.010361
GO:0016072 rRNA metabolic process 1.6% (2/125) 4.73 0.002571 0.010361
GO:0043170 macromolecule metabolic process 13.6% (17/125) 1.09 0.002629 0.01044
GO:0006432 phenylalanyl-tRNA aminoacylation 0.8% (1/125) 8.38 0.003007 0.011433
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 0.8% (1/125) 8.38 0.003007 0.011433
GO:0004826 phenylalanine-tRNA ligase activity 0.8% (1/125) 8.38 0.003007 0.011433
GO:0008168 methyltransferase activity 3.2% (4/125) 2.65 0.003938 0.014767
GO:0016741 transferase activity, transferring one-carbon groups 3.2% (4/125) 2.56 0.004858 0.017967
GO:0004386 helicase activity 1.6% (2/125) 4.17 0.005575 0.02007
GO:0003743 translation initiation factor activity 1.6% (2/125) 4.17 0.005575 0.02007
GO:0008253 5'-nucleotidase activity 0.8% (1/125) 7.38 0.006004 0.02052
GO:0008252 nucleotidase activity 0.8% (1/125) 7.38 0.006004 0.02052
GO:0006303 double-strand break repair via nonhomologous end joining 0.8% (1/125) 7.38 0.006004 0.02052
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 0.8% (1/125) 7.38 0.006004 0.02052
GO:1990904 ribonucleoprotein complex 1.6% (2/125) 4.06 0.006491 0.021907
GO:0008652 amino acid biosynthetic process 1.6% (2/125) 3.89 0.008158 0.027194
GO:0019238 cyclohydrolase activity 0.8% (1/125) 6.79 0.008993 0.027908
GO:0005730 nucleolus 0.8% (1/125) 6.79 0.008993 0.027908
GO:0032200 telomere organization 0.8% (1/125) 6.79 0.008993 0.027908
GO:0043138 3'-5' DNA helicase activity 0.8% (1/125) 6.79 0.008993 0.027908
GO:0000723 telomere maintenance 0.8% (1/125) 6.79 0.008993 0.027908
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.8% (1/125) 6.79 0.008993 0.027908
GO:0006950 response to stress 3.2% (4/125) 2.29 0.009362 0.028726
GO:0044238 primary metabolic process 15.2% (19/125) 0.82 0.010549 0.032002
GO:0046451 diaminopimelate metabolic process 0.8% (1/125) 6.38 0.011973 0.034027
GO:0009085 lysine biosynthetic process 0.8% (1/125) 6.38 0.011973 0.034027
GO:0009089 lysine biosynthetic process via diaminopimelate 0.8% (1/125) 6.38 0.011973 0.034027
GO:0006553 lysine metabolic process 0.8% (1/125) 6.38 0.011973 0.034027
GO:0006302 double-strand break repair 0.8% (1/125) 6.38 0.011973 0.034027
GO:0140097 catalytic activity, acting on DNA 1.6% (2/125) 3.62 0.011587 0.034761
GO:0044260 cellular macromolecule metabolic process 4.8% (6/125) 1.64 0.013265 0.037308
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 0.8% (1/125) 6.06 0.014943 0.041595
GO:0071704 organic substance metabolic process 15.2% (19/125) 0.76 0.01606 0.044246
GO:0005575 cellular_component 10.4% (13/125) 0.96 0.016723 0.045608
GO:0008135 translation factor activity, RNA binding 1.6% (2/125) 3.31 0.017455 0.046205
GO:0090079 translation regulator activity, nucleic acid binding 1.6% (2/125) 3.31 0.017455 0.046205
GO:0045182 translation regulator activity 1.6% (2/125) 3.31 0.017455 0.046205
GO:1990316 Atg1/ULK1 kinase complex 0.8% (1/125) 5.79 0.017905 0.046485
GO:0008134 transcription factor binding 0.8% (1/125) 5.79 0.017905 0.046485
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_36 0.016 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_145 0.022 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_123 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_6 0.023 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_71 0.045 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_96 0.032 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_120 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_25 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_211 0.018 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_6 0.025 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_53 0.016 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_283 0.032 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_328 0.028 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_106 0.021 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_130 0.016 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_32 0.018 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_92 0.018 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_99 0.016 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_13 0.039 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_12 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_48 0.02 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_53 0.079 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.041 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_81 0.022 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_155 0.04 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_112 0.02 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_120 0.018 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_121 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_27 0.022 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_38 0.025 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_57 0.025 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_178 0.019 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_32 0.02 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_35 0.026 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_67 0.02 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_11 0.019 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_16 0.017 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_134 0.016 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_145 0.018 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_39 0.024 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_15 0.015 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_26 0.019 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.086 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_12 0.037 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_153 0.017 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_75 0.015 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_118 0.037 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_130 0.021 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_137 0.019 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_9 0.025 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.029 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_60 0.095 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_113 0.03 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_131 0.019 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_145 0.026 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_72 0.016 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_98 0.021 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_130 0.02 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_212 0.022 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_29 0.019 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_41 0.015 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_291 0.02 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_141 0.022 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_172 0.018 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_181 0.016 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_1 0.029 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_33 0.019 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_34 0.017 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_45 0.02 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_58 0.021 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_8 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_19 0.09 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_21 0.028 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_22 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_136 0.026 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_56 0.02 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_66 0.019 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_87 0.023 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_73 0.018 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_140 0.023 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_141 0.018 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_181 0.022 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.086 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_44 0.016 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_75 0.017 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_21 0.024 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_65 0.017 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_82 0.021 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_120 0.022 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_184 0.019 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_55 0.018 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.027 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_67 0.019 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_121 0.034 OrthoFinder output from all 47 species Compare
Sequences (125) (download table)

InterPro Domains

GO Terms

Family Terms