Zm00001e006430_P001 (XPO1A, HIT2, ATCRM1,...)

Aliases : XPO1A, HIT2, ATCRM1, XPO1, ATXPO1, Zm00001e006430

Description : XPO1 nucleocytoplasmic export karyopherin

Gene families : OG0003383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003383_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e006430_P001
Cluster	HCCA: Cluster_183

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00152740	XPO1A, HIT2,...	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
AT5G17020	XPO1A, HIT2,...	exportin 1A	0.03	OrthoFinder output from all 47 species
Adi_g018503	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.03	OrthoFinder output from all 47 species
Aev_g14729	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.06	OrthoFinder output from all 47 species
Ala_g06015	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.06	OrthoFinder output from all 47 species
Aop_g01399	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0236.g059546	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0518.g075210	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.04	OrthoFinder output from all 47 species
Ceric.14G073300.1	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001154.14	CRM1B, XPO1B	Protein EXPORTIN 1B OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dcu_g13815	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.04	OrthoFinder output from all 47 species
Dde_g02403	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01024418001	XPO1A, HIT2,...	Protein translocation.nucleus.nucleocytoplasmic...	0.12	OrthoFinder output from all 47 species
Gb_26953	XPO1A, HIT2,...	XPO1 nucleocytoplasmic export karyopherin	0.06	OrthoFinder output from all 47 species
Lfl_g07837	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.04	OrthoFinder output from all 47 species
MA_40908g0010	XPO1A, HIT2,...	XPO1 nucleocytoplasmic export karyopherin	0.1	OrthoFinder output from all 47 species
MA_88625g0010	XPO1A, HIT2,...	XPO1 nucleocytoplasmic export karyopherin	0.08	OrthoFinder output from all 47 species
Mp7g03970.1	XPO1A, HIT2,...	XPO1 nucleocytoplasmic export karyopherin	0.03	OrthoFinder output from all 47 species
Ore_g25272	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.05	OrthoFinder output from all 47 species
Pir_g11402	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g03977	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023216	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.02	OrthoFinder output from all 47 species
Sam_g40475	No alias	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.05	OrthoFinder output from all 47 species
Sam_g40917	No alias	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.02	OrthoFinder output from all 47 species
Smo233936	XPO1A, HIT2,...	Protein translocation.nucleus.nucleocytoplasmic...	0.05	OrthoFinder output from all 47 species
Solyc03g096920.3.1	XPO1A, HIT2,...	XPO1 nucleocytoplasmic export karyopherin	0.08	OrthoFinder output from all 47 species
Spa_g15689	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.03	OrthoFinder output from all 47 species
Tin_g03542	XPO1A, HIT2,...	nucleocytoplasmic export karyopherin *(XPO1) & original...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005049	nuclear export signal receptor activity	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0140104	molecular carrier activity	None	Extended
MF	GO:0140142	nucleocytoplasmic carrier activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013598	Exportin-1/Importin-b-like	66	209
IPR041235	Exp1_repeat_2	357	424
IPR014877	XPO1_C_dom	661	980
IPR041123	CRM1_repeat	287	322
IPR040485	XPO1_repeat_3	437	487
IPR001494	Importin-beta_N	2	54

External Links

No external refs found!

Zm00001e006430_P001 (XPO1A, HIT2, ATCRM1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation