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  5. Zm00001e006375_P001

Zm00001e006375_P001 (U2A', Zm00001e006375)


Aliases : U2A', Zm00001e006375

Description : protein factor U2A of U2 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006375_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G09760 U2A' U2 small nuclear ribonucleoprotein A 0.03 OrthoFinder output from all 47 species
Aop_g07390 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.28 U2A' U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre16.g679600 U2A' RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
GSVIVT01001138001 U2A' RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_32070 U2A' protein factor U2A of U2 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g13990.1 U2A', LOC_Os02g13990 protein factor U2A of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
MA_764890g0010 U2A' protein factor U2A of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Mp1g11620.1 U2A' protein factor U2A of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Sam_g06538 No alias component *(U2A) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g117940.3.1 U2A', Solyc03g117940 protein factor U2A of U2 small nuclear ribonucleoprotein... 0.05 OrthoFinder output from all 47 species
Tin_g03952 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004140 dephospho-CoA kinase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0015937 coenzyme A biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!