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Gb_38755


Description : ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana (sp|f4jfj3|y3206_arath : 981.0)


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38755
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT3G02060 No alias DEAD/DEAH box helicase, putative 0.05 OrthoFinder output from all 47 species
Aev_g07951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g22379 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.03 OrthoFinder output from all 47 species
Dde_g04918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032955001 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
Lfl_g05693 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10297916g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
MA_10436969g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species
Mp2g07230.1 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g10930 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 511 611
IPR011545 DEAD/DEAH_box_helicase_dom 327 464
IPR003711 CarD-like/TRCF_RID 178 276
No external refs found!