Aliases : EMB2453, ATPPR5
Description : Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana (sp|q9sv96|pp358_arath : 511.0)
Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_36199 | |
Cluster | HCCA: Cluster_135 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00007p00203740 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein At4g39620,... | 0.04 | OrthoFinder output from all 47 species | |
AT3G06430 | EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
AT4G39620 | EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.11 | OrthoFinder output from all 47 species | |
AT5G48730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0174.g055903 | EMB2453, ATPPR5 | not classified & original description: CDS=133-1563 | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g01190 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g02809 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01017677001 | EMB2750 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.08 | OrthoFinder output from all 47 species | |
GSVIVT01022204001 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01028689001 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g51480.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g02430.1 | LOC_Os03g02430 | Pentatricopeptide repeat-containing protein At3g53170... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os03g19650.3 | EMB2750, LOC_Os03g19650 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g07550.1 | LOC_Os06g07550 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.06 | OrthoFinder output from all 47 species | |
MA_12518g0010 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein PPR5... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g07398 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g09304 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g16720 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g11535 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0066.g016075 | No alias | not classified & original description: CDS=33-1412 | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0080.g017959 | EMB2453, ATPPR5 | not classified & original description: CDS=1-1101 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g51172 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g006500.4.1 | Solyc01g006500 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.06 | OrthoFinder output from all 47 species | |
Solyc01g057200.4.1 | EMB2750, Solyc01g057200 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g054270.4.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.09 | OrthoFinder output from all 47 species | |
Solyc08g045780.4.1 | Solyc08g045780 | Pentatricopeptide repeat-containing protein At3g53170... | 0.02 | OrthoFinder output from all 47 species | |
Solyc12g098990.2.1 | EMB2750, Solyc12g098990 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g12418 | EMB2453, ATPPR5 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Tin_g00939 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e023883_P001 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5,... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e031052_P001 | Zm00001e031052 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e032726_P001 | EMB2750, Zm00001e032726 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No external refs found! |