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  5. Cpa|evm.model.tig00021319.56

Cpa|evm.model.tig00021319.56 (emb2726)


Aliases : emb2726

Description : Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor


Gene families : OG0003250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021319.56
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00129480 emb2726,... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT4G29060 emb2726 elongation factor Ts family protein 0.05 OrthoFinder output from all 47 species
Adi_g118105 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Ala_g13148 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Aop_g04344 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Aop_g25286 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Cba_g71569 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Cba_g78300 emb2726 translation elongation factor *(EF-Ts) & original... 0.01 OrthoFinder output from all 47 species
Ceric.03G081000.1 emb2726, Ceric.03G081000 translation elongation factor *(EF-Ts) & original... 0.06 OrthoFinder output from all 47 species
Cre12.g519180 emb2726 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Dac_g16809 emb2726 translation elongation factor *(EF-Ts) & original... 0.01 OrthoFinder output from all 47 species
Dac_g16810 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g01025 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Dde_g06930 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g05564 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Gb_29672 emb2726 EF-Ts translation elongation factor 0.03 OrthoFinder output from all 47 species
LOC_Os12g35630.1 emb2726, LOC_Os12g35630 EF-Ts translation elongation factor 0.04 OrthoFinder output from all 47 species
Len_g59815 emb2726 translation elongation factor *(EF-Ts) & original... 0.01 OrthoFinder output from all 47 species
MA_10436165g0010 emb2726 EF-Ts translation elongation factor 0.03 OrthoFinder output from all 47 species
Mp2g23510.1 emb2726 EF-Ts translation elongation factor 0.01 OrthoFinder output from all 47 species
Nbi_g14225 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g11907 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g11585 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29843 emb2726 translation elongation factor *(EF-Ts) & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022632 emb2726 translation elongation factor *(EF-Ts) & original... 0.02 OrthoFinder output from all 47 species
Smo60716 emb2726 Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Solyc07g018360.3.1 emb2726, Solyc07g018360 EF-Ts translation elongation factor 0.03 OrthoFinder output from all 47 species
Spa_g21728 emb2726 translation elongation factor *(EF-Ts) & original... 0.03 OrthoFinder output from all 47 species
Tin_g03798 emb2726 translation elongation factor *(EF-Ts) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e010912_P001 emb2726, Zm00001e010912 EF-Ts translation elongation factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014039 Transl_elong_EFTs/EF1B_dimer 193 252
IPR014039 Transl_elong_EFTs/EF1B_dimer 81 200
No external refs found!