Coexpression cluster: Cluster_73 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034645 cellular macromolecule biosynthetic process 16.67% (7/42) 5.48 0.0 0.0
GO:0043604 amide biosynthetic process 14.29% (6/42) 5.28 0.0 0.0
GO:0006518 peptide metabolic process 14.29% (6/42) 5.25 0.0 0.0
GO:0003735 structural constituent of ribosome 14.29% (6/42) 5.43 0.0 0.0
GO:0005198 structural molecule activity 14.29% (6/42) 5.29 0.0 0.0
GO:0043603 amide metabolic process 14.29% (6/42) 5.2 0.0 0.0
GO:0009059 macromolecule biosynthetic process 16.67% (7/42) 4.69 0.0 0.0
GO:0043228 non-membrane-bounded organelle 14.29% (6/42) 5.13 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 14.29% (6/42) 5.13 0.0 0.0
GO:0006412 translation 14.29% (6/42) 5.45 0.0 0.0
GO:0043043 peptide biosynthetic process 14.29% (6/42) 5.31 0.0 0.0
GO:0005840 ribosome 14.29% (6/42) 5.48 0.0 0.0
GO:0043170 macromolecule metabolic process 28.57% (12/42) 2.63 0.0 3e-06
GO:0110165 cellular anatomical entity 21.43% (9/42) 3.19 0.0 4e-06
GO:0034641 cellular nitrogen compound metabolic process 23.81% (10/42) 2.9 1e-06 5e-06
GO:1901566 organonitrogen compound biosynthetic process 14.29% (6/42) 4.19 1e-06 6e-06
GO:0043229 intracellular organelle 14.29% (6/42) 4.19 1e-06 6e-06
GO:0043226 organelle 14.29% (6/42) 4.18 1e-06 6e-06
GO:0003674 molecular_function 54.76% (23/42) 1.39 1e-06 9e-06
GO:0044237 cellular metabolic process 28.57% (12/42) 2.41 1e-06 9e-06
GO:1901564 organonitrogen compound metabolic process 23.81% (10/42) 2.72 2e-06 1.1e-05
GO:0044260 cellular macromolecule metabolic process 16.67% (7/42) 3.52 2e-06 1.3e-05
GO:0140101 catalytic activity, acting on a tRNA 9.52% (4/42) 5.2 4e-06 2.3e-05
GO:0005622 intracellular anatomical structure 9.52% (4/42) 5.09 6e-06 3e-05
GO:0044249 cellular biosynthetic process 16.67% (7/42) 3.28 7e-06 3.3e-05
GO:0006399 tRNA metabolic process 9.52% (4/42) 4.99 8e-06 3.6e-05
GO:0009987 cellular process 33.33% (14/42) 1.9 9e-06 4.2e-05
GO:1901576 organic substance biosynthetic process 16.67% (7/42) 3.19 1e-05 4.5e-05
GO:0005575 cellular_component 21.43% (9/42) 2.62 1.2e-05 5e-05
GO:0071704 organic substance metabolic process 28.57% (12/42) 2.1 1.2e-05 5.1e-05
GO:0009058 biosynthetic process 16.67% (7/42) 3.06 1.8e-05 7.1e-05
GO:0044271 cellular nitrogen compound biosynthetic process 14.29% (6/42) 3.41 2e-05 7.6e-05
GO:0034660 ncRNA metabolic process 9.52% (4/42) 4.63 2.1e-05 7.7e-05
GO:0006807 nitrogen compound metabolic process 26.19% (11/42) 2.16 2.1e-05 7.8e-05
GO:0008152 metabolic process 28.57% (12/42) 1.98 2.8e-05 0.0001
GO:0006418 tRNA aminoacylation for protein translation 7.14% (3/42) 5.5 4e-05 0.000138
GO:0044238 primary metabolic process 26.19% (11/42) 2.04 4.5e-05 0.000152
GO:0004812 aminoacyl-tRNA ligase activity 7.14% (3/42) 5.36 5.4e-05 0.000155
GO:0016875 ligase activity, forming carbon-oxygen bonds 7.14% (3/42) 5.36 5.4e-05 0.000155
GO:0043039 tRNA aminoacylation 7.14% (3/42) 5.39 5e-05 0.000159
GO:0043038 amino acid activation 7.14% (3/42) 5.39 5e-05 0.000159
GO:1901363 heterocyclic compound binding 26.19% (11/42) 2.02 5.4e-05 0.000162
GO:0097159 organic cyclic compound binding 26.19% (11/42) 2.02 5.4e-05 0.000162
GO:0140098 catalytic activity, acting on RNA 9.52% (4/42) 4.11 8.4e-05 0.000236
GO:0019538 protein metabolic process 16.67% (7/42) 2.62 0.000125 0.000344
GO:0005488 binding 35.71% (15/42) 1.46 0.000145 0.000392
GO:0043168 anion binding 19.05% (8/42) 2.29 0.000189 0.0005
GO:1901265 nucleoside phosphate binding 19.05% (8/42) 2.27 0.000207 0.000525
GO:0000166 nucleotide binding 19.05% (8/42) 2.27 0.000207 0.000525
GO:0008150 biological_process 33.33% (14/42) 1.49 0.000218 0.00054
GO:0005524 ATP binding 16.67% (7/42) 2.46 0.000241 0.000586
GO:0032559 adenyl ribonucleotide binding 16.67% (7/42) 2.45 0.000253 0.000604
GO:0036094 small molecule binding 19.05% (8/42) 2.2 0.000282 0.000659
GO:0030554 adenyl nucleotide binding 16.67% (7/42) 2.4 0.000318 0.000731
GO:0140640 catalytic activity, acting on a nucleic acid 9.52% (4/42) 3.51 0.00041 0.000925
GO:0006520 amino acid metabolic process 7.14% (3/42) 4.26 0.000517 0.001144
GO:0035639 purine ribonucleoside triphosphate binding 16.67% (7/42) 2.23 0.000624 0.001357
GO:0032555 purine ribonucleotide binding 16.67% (7/42) 2.22 0.00065 0.001365
GO:0016874 ligase activity 7.14% (3/42) 4.16 0.00064 0.001368
GO:0016070 RNA metabolic process 9.52% (4/42) 3.33 0.000662 0.001369
GO:0032553 ribonucleotide binding 16.67% (7/42) 2.19 0.000737 0.001498
GO:0097367 carbohydrate derivative binding 16.67% (7/42) 2.19 0.000752 0.001503
GO:0017076 purine nucleotide binding 16.67% (7/42) 2.17 0.000802 0.001578
GO:0019752 carboxylic acid metabolic process 7.14% (3/42) 3.8 0.001316 0.00255
GO:0043436 oxoacid metabolic process 7.14% (3/42) 3.76 0.001407 0.002685
GO:0006082 organic acid metabolic process 7.14% (3/42) 3.74 0.00147 0.002762
GO:0006426 glycyl-tRNA aminoacylation 2.38% (1/42) 9.2 0.0017 0.003056
GO:0004820 glycine-tRNA ligase activity 2.38% (1/42) 9.2 0.0017 0.003056
GO:0017038 protein import 2.38% (1/42) 9.2 0.0017 0.003056
GO:0043167 ion binding 19.05% (8/42) 1.8 0.001768 0.003131
GO:0003676 nucleic acid binding 11.9% (5/42) 2.15 0.005073 0.00886
GO:0090304 nucleic acid metabolic process 9.52% (4/42) 2.35 0.007656 0.013185
GO:0006414 translational elongation 2.38% (1/42) 6.62 0.010159 0.017024
GO:0003746 translation elongation factor activity 2.38% (1/42) 6.62 0.010159 0.017024
GO:0017150 tRNA dihydrouridine synthase activity 2.38% (1/42) 6.03 0.015201 0.024802
GO:0106413 dihydrouridine synthase activity 2.38% (1/42) 6.03 0.015201 0.024802
GO:0044281 small molecule metabolic process 7.14% (3/42) 2.41 0.018618 0.029223
GO:0042254 ribosome biogenesis 2.38% (1/42) 5.74 0.018548 0.029487
GO:0022613 ribonucleoprotein complex biogenesis 2.38% (1/42) 5.74 0.018548 0.029487
GO:0044085 cellular component biogenesis 2.38% (1/42) 5.62 0.020218 0.031338
GO:0006139 nucleobase-containing compound metabolic process 9.52% (4/42) 1.83 0.025476 0.039
GO:0006725 cellular aromatic compound metabolic process 9.52% (4/42) 1.74 0.030856 0.046098
GO:0046483 heterocycle metabolic process 9.52% (4/42) 1.75 0.030579 0.046242
GO:1901360 organic cyclic compound metabolic process 9.52% (4/42) 1.72 0.032406 0.047838
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_143 0.021 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_7 0.017 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_326 0.024 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_385 0.016 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_123 0.015 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_36 0.022 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_271 0.025 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_305 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_65 0.018 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_92 0.019 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_8 0.024 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_57 0.018 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_103 0.022 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_54 0.064 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_126 0.034 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_168 0.018 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_195 0.02 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_185 0.027 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_5 0.019 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_5 0.018 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_6 0.019 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_34 0.017 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_50 0.027 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_66 0.021 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_7 0.031 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_170 0.033 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_59 0.03 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_27 0.023 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_5 0.018 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_85 0.018 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_150 0.016 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_101 0.016 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_28 0.026 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_11 0.019 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_51 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_133 0.019 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_78 0.034 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_90 0.019 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_90 0.023 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_2 0.023 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_79 0.016 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_114 0.029 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.017 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_81 0.032 OrthoFinder output from all 47 species Compare
Sequences (42) (download table)

InterPro Domains

GO Terms

Family Terms