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  5. Cpa|evm.model.tig00000863.30

Cpa|evm.model.tig00000863.30


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component


Gene families : OG0004103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000863.30
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Als_g01448 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre01.g017300 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dac_g01906 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g41032 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os02g09590.1 GHS1, LOC_Os02g09590 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.02 OrthoFinder output from all 47 species
Len_g15740 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Lfl_g02717 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Lfl_g18474 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Mp4g21580.1 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.02 OrthoFinder output from all 47 species
Ore_g01870 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Smo444102 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Solyc02g068090.3.1 GHS1, Solyc02g068090 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.01 OrthoFinder output from all 47 species
Spa_g18473 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Zm00001e013920_P001 GHS1, Zm00001e013920 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001911 Ribosomal_S21 32 83
No external refs found!