AT5G54810 (TRP2, TSB1, ATTSB1, TRPB)

Aliases : TRP2, TSB1, ATTSB1, TRPB

Description : tryptophan synthase beta-subunit 1

Gene families : OG0002978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002978_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54810

Target	Alias	Description	ECC score	Gene Family Method
Als_g43653	TRP2, TSB1, ATTSB1, TRPB	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45011.t1	TRP2, TSB1,...	EC_4.2 carbon-oxygen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Cre03.g161400	TRP2, TSB1, ATTSB1, TRPB	Amino acid metabolism.biosynthesis.shikimate...	0.02	OrthoFinder output from all 47 species
GSVIVT01012644001	No alias	Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen...	0.03	OrthoFinder output from all 47 species
LOC_Os08g04180.1	TSB2, LOC_Os08g04180	subunit beta of tryptophan synthase complex	0.03	OrthoFinder output from all 47 species
Solyc10g005320.3.1	Solyc10g005320	Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen...	0.04	OrthoFinder output from all 47 species
Solyc10g018380.3.1	Solyc10g018380	Tryptophan synthase beta chain 2, chloroplastic...	0.02	OrthoFinder output from all 47 species
Spa_g10445	TSB2	EC_4.2 carbon-oxygen lyase & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e040313_P001	TRP2, TSB1,...	subunit beta of tryptophan synthase complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004834	tryptophan synthase activity	IDA	Interproscan
MF	GO:0004834	tryptophan synthase activity	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006568	tryptophan metabolic process	None	Extended
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISS	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009683	indoleacetic acid metabolic process	None	Extended
BP	GO:0009684	indoleacetic acid biosynthetic process	TAS	Interproscan
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	biogenic amine biosynthetic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046219	indolalkylamine biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0004049	anthranilate synthase activity	IEP	HCCA
MF	GO:0004363	glutathione synthase activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004737	pyruvate decarboxylase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005950	anthranilate synthase complex	IEP	HCCA
BP	GO:0006566	threonine metabolic process	IEP	HCCA
BP	GO:0006567	threonine catabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006750	glutathione biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009403	toxin biosynthetic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009625	response to insect	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009682	induced systemic resistance	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010112	regulation of systemic acquired resistance	IEP	HCCA
BP	GO:0010120	camalexin biosynthetic process	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
MF	GO:0010298	dihydrocamalexic acid decarboxylase activity	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010311	lateral root formation	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016833	oxo-acid-lyase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
MF	GO:0043295	glutathione binding	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046217	indole phytoalexin metabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046482	para-aminobenzoic acid metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0047720	indoleacetaldoxime dehydratase activity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052314	phytoalexin metabolic process	IEP	HCCA
BP	GO:0052315	phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0052317	camalexin metabolic process	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052482	defense response by cell wall thickening	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0052544	defense response by callose deposition in cell wall	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071398	cellular response to fatty acid	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0072341	modified amino acid binding	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
MF	GO:0097243	flavonoid binding	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:1900750	oligopeptide binding	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
MF	GO:1904091	non-ribosomal peptide synthetase activity	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA
MF	GO:2001147	camalexin binding	IEP	HCCA
MF	GO:2001227	quercitrin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001926	TrpB-like_PALP	125	455

External Links

No external refs found!

AT5G54810 (TRP2, TSB1, ATTSB1, TRPB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation