AT5G35210


Description : metalloendopeptidases;zinc ion binding;DNA binding


Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G35210

Target Alias Description ECC score Gene Family Method Actions
Adi_g107345 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10447 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07161 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene10761.t1 Aspi01Gene10761 PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14585.t1 Aspi01Gene14585 PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36310.t1 Aspi01Gene36310 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene36311.t1 Aspi01Gene36311 PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36312.t1 Aspi01Gene36312 PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75389 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cre05.g247000 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g14658 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04154 No alias PHD finger transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40975 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09845 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08699 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031411001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.06 OrthoFinder output from all 47 species
GSVIVT01037231001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.05 OrthoFinder output from all 47 species
LOC_Os07g46690.1 LOC_Os07g46690 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os11g05130.1 LOC_Os11g05130 PHD finger transcription factor 0.08 OrthoFinder output from all 47 species
Lfl_g05757 No alias PHD finger transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10689g0010 No alias PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Mp4g03480.1 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g48762 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38137 No alias PHD finger transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20406 No alias PHD finger transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03291 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003692 No alias PHD finger transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Sam_g25995 No alias PHD finger transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Smo441144 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Solyc11g065160.3.1 Solyc11g065160 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Solyc11g066780.3.1 Solyc11g066780 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035778_P001 Zm00001e035778 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription ISS Interproscan
CC GO:0009707 chloroplast outer membrane IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010019 chloroplast-nucleus signaling pathway IDA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription IDA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004430 1-phosphatidylinositol 4-kinase activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008022 protein C-terminus binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009636 response to toxic substance IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009895 negative regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010506 regulation of autophagy IEP HCCA
BP GO:0010507 negative regulation of autophagy IEP HCCA
BP GO:0010599 lsiRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016303 1-phosphatidylinositol-3-kinase activity IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030307 positive regulation of cell growth IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031330 negative regulation of cellular catabolic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035004 phosphatidylinositol 3-kinase activity IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0035279 miRNA-mediated gene silencing by mRNA destabilization IEP HCCA
CC GO:0035619 root hair tip IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040019 positive regulation of embryonic development IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0043487 regulation of RNA stability IEP HCCA
BP GO:0043488 regulation of mRNA stability IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045739 positive regulation of DNA repair IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0045995 regulation of embryonic development IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048768 root hair cell tip growth IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050779 RNA destabilization IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0051286 cell tip IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
MF GO:0052742 phosphatidylinositol kinase activity IEP HCCA
CC GO:0060187 cell pole IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0061014 positive regulation of mRNA catabolic process IEP HCCA
BP GO:0061157 mRNA destabilization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
BP GO:1903313 positive regulation of mRNA metabolic process IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000232 regulation of rRNA processing IEP HCCA
BP GO:2000234 positive regulation of rRNA processing IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR028942 WHIM1_dom 307 339
IPR018501 DDT_dom 193 246
IPR019787 Znf_PHD-finger 414 456
No external refs found!