Aliases : EMB3011
Description : RNA helicase family protein
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT5G13010 | |
Cluster | HCCA: Cluster_94 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00022p00074370 | EMB3011,... | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g008210 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g060167 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g107993 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g04491 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g11041 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aob_g19131 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g29988 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g13922 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g15706 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene30678.t1 | Aspi01Gene30678 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g04735 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.01G059500.1 | Ceric.01G059500 | not classified & original description: pacid=50591809... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.04G078700.1 | Ceric.04G078700 | not classified & original description: pacid=50630845... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000842.2 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Cre03.g182950 | No alias | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Cre07.g349100 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.01 | OrthoFinder output from all 47 species | |
Cre11.g467654 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Cre24.g755347 | EMB3011 | RNA processing.RNA splicing.spliceosome... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g16924 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g30923 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g13249 | No alias | RNA helicase *(Prp22) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g22478 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g00881 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g07449 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g22606 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Gb_14270 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g11370.1 | LOC_Os01g11370 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g19860.1 | LOC_Os02g19860 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os08g24760.1 | ESP3, EMB2733,... | RNA helicase (Prp2) | 0.03 | OrthoFinder output from all 47 species | |
MA_277016g0010 | ESP3, EMB2733 | RNA helicase (Prp2) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g13680.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Mp7g03460.1 | EMB3011 | RNA helicase (Prp16) | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g07572 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g21732 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g42990 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g10948 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pnu_g09947 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g26832 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g04698 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g14599 | No alias | RNA helicase *(Prp16) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Sam_g16290 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g29503 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo76120 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Smo82212 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
Solyc10g076910.2.1 | EMB3011, Solyc10g076910 | RNA helicase (Prp16) | 0.04 | OrthoFinder output from all 47 species | |
Spa_g12231 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g28400 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e010450_P001 | EMB3011, Zm00001e010450 | RNA helicase (Prp16) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e014112_P001 | Zm00001e014112 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e022095_P001 | ESP3, EMB2733,... | RNA helicase (Prp2) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e036358_P005 | Zm00001e036358 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e038305_P001 | Zm00001e038305 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003724 | RNA helicase activity | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0009793 | embryo development ending in seed dormancy | NAS | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000278 | mitotic cell cycle | IEP | HCCA |
BP | GO:0000303 | response to superoxide | IEP | HCCA |
BP | GO:0000305 | response to oxygen radical | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
BP | GO:0001708 | cell fate specification | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005795 | Golgi stack | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006282 | regulation of DNA repair | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006625 | protein targeting to peroxisome | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006635 | fatty acid beta-oxidation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | HCCA |
BP | GO:0007031 | peroxisome organization | IEP | HCCA |
BP | GO:0007049 | cell cycle | IEP | HCCA |
BP | GO:0007389 | pattern specification process | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008240 | tripeptidyl-peptidase activity | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009062 | fatty acid catabolic process | IEP | HCCA |
CC | GO:0009524 | phragmoplast | IEP | HCCA |
BP | GO:0009605 | response to external stimulus | IEP | HCCA |
BP | GO:0009606 | tropism | IEP | HCCA |
BP | GO:0009628 | response to abiotic stimulus | IEP | HCCA |
BP | GO:0009629 | response to gravity | IEP | HCCA |
BP | GO:0009630 | gravitropism | IEP | HCCA |
BP | GO:0009648 | photoperiodism | IEP | HCCA |
BP | GO:0009846 | pollen germination | IEP | HCCA |
BP | GO:0009880 | embryonic pattern specification | IEP | HCCA |
BP | GO:0009888 | tissue development | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010014 | meristem initiation | IEP | HCCA |
BP | GO:0010351 | lithium ion transport | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0015919 | peroxisomal membrane transport | IEP | HCCA |
BP | GO:0016042 | lipid catabolic process | IEP | HCCA |
BP | GO:0016054 | organic acid catabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
BP | GO:0016444 | somatic cell DNA recombination | IEP | HCCA |
BP | GO:0016558 | protein import into peroxisome matrix | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016832 | aldehyde-lyase activity | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019395 | fatty acid oxidation | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
BP | GO:0030258 | lipid modification | IEP | HCCA |
BP | GO:0030422 | siRNA processing | IEP | HCCA |
CC | GO:0031984 | organelle subcompartment | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
CC | GO:0034399 | nuclear periphery | IEP | HCCA |
BP | GO:0034440 | lipid oxidation | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0035196 | miRNA processing | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043574 | peroxisomal transport | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044242 | cellular lipid catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0044282 | small molecule catabolic process | IEP | HCCA |
BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0045739 | positive regulation of DNA repair | IEP | HCCA |
BP | GO:0046395 | carboxylic acid catabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0048573 | photoperiodism, flowering | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051054 | positive regulation of DNA metabolic process | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0055085 | transmembrane transport | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065002 | intracellular protein transmembrane transport | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
MF | GO:0070878 | primary miRNA binding | IEP | HCCA |
MF | GO:0070883 | pre-miRNA binding | IEP | HCCA |
BP | GO:0070918 | regulatory ncRNA processing | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0071806 | protein transmembrane transport | IEP | HCCA |
BP | GO:0072329 | monocarboxylic acid catabolic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072662 | protein localization to peroxisome | IEP | HCCA |
BP | GO:0072663 | establishment of protein localization to peroxisome | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090421 | embryonic meristem initiation | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0098542 | defense response to other organism | IEP | HCCA |
CC | GO:0098791 | Golgi apparatus subcompartment | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | HCCA |
BP | GO:2001022 | positive regulation of response to DNA damage stimulus | IEP | HCCA |
No external refs found! |