AT4G40040


Description : Histone superfamily protein


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G40040

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Adi_g014654 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61760 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55695.t1 Aspi01Gene55695 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65076.t1 Aspi01Gene65076 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G002400.1 Ceric.24G002400 histone *(H3) & original description: pacid=50629579... 0.07 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.02 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
Dcu_g11158 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g27747 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27287 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009838001 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
GSVIVT01027073001 HTR12, CENH3 Cell cycle.mitosis and meiosis.chromosome... 0.04 OrthoFinder output from all 47 species
Gb_08475 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Gb_40804 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os01g64640.1 LOC_Os01g64640 histone (H3) 0.06 OrthoFinder output from all 47 species
LOC_Os03g27310.2 LOC_Os03g27310 histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os05g36280.1 LOC_Os05g36280 histone (H3) 0.07 OrthoFinder output from all 47 species
LOC_Os05g41080.1 LOC_Os05g41080 histone H3 variant (CENH3) 0.03 OrthoFinder output from all 47 species
LOC_Os06g04030.1 LOC_Os06g04030 histone (H3) 0.04 OrthoFinder output from all 47 species
Len_g19487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g23375 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Nbi_g07789 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_8550V3.1 Pp3c20_8550 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c22_8680V3.1 Pp3c22_8680 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g06094 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc05g051500.4.1 Solyc05g051500 histone (H3) 0.11 OrthoFinder output from all 47 species
Solyc10g008910.1.1 Solyc10g008910 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc11g010230.2.1 Solyc11g010230 histone (H3) 0.05 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.03 OrthoFinder output from all 47 species
Spa_g27650 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52113 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001885_P003 Zm00001e001885 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e029901_P001 Zm00001e029901 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e036599_P001 Zm00001e036599 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006007 glucose catabolic process RCA Interproscan
BP GO:0006605 protein targeting RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!