AT4G40040

Description : Histone superfamily protein

Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G40040

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00225p00023630	No alias	Chromatin organisation.histones.H3-type histone	0.05	OrthoFinder output from all 47 species
Adi_g014654	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g61760	No alias	histone H3 variant *(CENH3) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene55695.t1	Aspi01Gene55695	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65076.t1	Aspi01Gene65076	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g72193	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.24G002400.1	Ceric.24G002400	histone *(H3) & original description: pacid=50629579...	0.07	OrthoFinder output from all 47 species
Cre06.g267950	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre06.g274000	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre06.g274101	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre06.g274350	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre06.g274850	No alias	Chromatin organisation.histones.H3-type histone	0.05	OrthoFinder output from all 47 species
Cre06.g275750	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre06.g276850	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre13.g569950	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Cre16.g661450	No alias	Cell cycle.mitosis and meiosis.chromosome...	0.02	OrthoFinder output from all 47 species
Cre17.g708700	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
Dcu_g11158	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g27747	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27287	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009838001	No alias	Chromatin organisation.histones.H3-type histone	0.04	OrthoFinder output from all 47 species
GSVIVT01027073001	HTR12, CENH3	Cell cycle.mitosis and meiosis.chromosome...	0.04	OrthoFinder output from all 47 species
Gb_08475	No alias	histone (H3)	0.04	OrthoFinder output from all 47 species
Gb_40804	No alias	histone (H3)	0.03	OrthoFinder output from all 47 species
LOC_Os01g64640.1	LOC_Os01g64640	histone (H3)	0.06	OrthoFinder output from all 47 species
LOC_Os03g27310.2	LOC_Os03g27310	histone (H3)	0.03	OrthoFinder output from all 47 species
LOC_Os05g36280.1	LOC_Os05g36280	histone (H3)	0.07	OrthoFinder output from all 47 species
LOC_Os05g41080.1	LOC_Os05g41080	histone H3 variant (CENH3)	0.03	OrthoFinder output from all 47 species
LOC_Os06g04030.1	LOC_Os06g04030	histone (H3)	0.04	OrthoFinder output from all 47 species
Len_g19487	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g23375	No alias	histone *(H3) & original description: none	0.02	OrthoFinder output from all 47 species
MA_475294g0010	No alias	histone (H3)	0.03	OrthoFinder output from all 47 species
Mp7g16200.1	No alias	histone (H3)	0.02	OrthoFinder output from all 47 species
Nbi_g07789	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c20_8550V3.1	Pp3c20_8550	Histone superfamily protein	0.03	OrthoFinder output from all 47 species
Pp3c22_8680V3.1	Pp3c22_8680	Histone superfamily protein	0.01	OrthoFinder output from all 47 species
Ppi_g06094	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g074000.3.1	Solyc01g074000	histone (H3)	0.06	OrthoFinder output from all 47 species
Solyc01g079110.4.1	Solyc01g079110	histone (H3)	0.03	OrthoFinder output from all 47 species
Solyc01g086820.4.1	Solyc01g086820	histone (H3)	0.03	OrthoFinder output from all 47 species
Solyc05g051500.4.1	Solyc05g051500	histone (H3)	0.11	OrthoFinder output from all 47 species
Solyc10g008910.1.1	Solyc10g008910	histone (H3)	0.04	OrthoFinder output from all 47 species
Solyc11g010230.2.1	Solyc11g010230	histone (H3)	0.05	OrthoFinder output from all 47 species
Solyc12g056540.1.1	Solyc12g056540	histone (H3)	0.03	OrthoFinder output from all 47 species
Spa_g27650	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g52113	No alias	histone *(H3) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001885_P003	Zm00001e001885	histone (H3)	0.05	OrthoFinder output from all 47 species
Zm00001e029901_P001	Zm00001e029901	histone (H3)	0.03	OrthoFinder output from all 47 species
Zm00001e036599_P001	Zm00001e036599	histone (H3)	0.03	OrthoFinder output from all 47 species
Zm00001e040856_P001	Zm00001e040856	histone (H3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0006605	protein targeting	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	1	132

External Links

No external refs found!

AT4G40040

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation