AT4G28200


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G28200

Target Alias Description ECC score Gene Family Method Actions
Adi_g025714 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Aev_g01496 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Als_g22988 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08502 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2889.g113567 No alias SSU processome assembly factor *(UTP6) & original... 0.04 OrthoFinder output from all 47 species
Cba_g07642 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.34G074700.1 Ceric.34G074700 SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Cre10.g442000 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Dcu_g08199 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012705001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Gb_01417 No alias SSU processome assembly factor (UTP6) 0.02 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species
MA_10435952g0010 No alias SSU processome assembly factor (UTP6) 0.09 OrthoFinder output from all 47 species
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.11 OrthoFinder output from all 47 species
Ore_g44960 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Pir_g09702 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g16083 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009974 No alias chloroplast import factor *(PRAT1) & original... 0.06 OrthoFinder output from all 47 species
Sam_g29993 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Tin_g02822 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e011580_P001 Zm00001e011580 SSU processome assembly factor (UTP6) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
BP GO:0000741 karyogamy RCA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006396 RNA processing RCA Interproscan
BP GO:0006406 mRNA export from nucleus RCA Interproscan
BP GO:0006606 protein import into nucleus RCA Interproscan
BP GO:0006626 protein targeting to mitochondrion RCA Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010074 maintenance of meristem identity RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0016571 histone methylation RCA Interproscan
BP GO:0016579 protein deubiquitination RCA Interproscan
BP GO:0030422 siRNA processing RCA Interproscan
BP GO:0035196 miRNA processing RCA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription RCA Interproscan
BP GO:0051604 protein maturation RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004824 lysine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006430 lysyl-tRNA aminoacylation IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034599 cellular response to oxidative stress IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042645 mitochondrial nucleoid IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0051131 chaperone-mediated protein complex assembly IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0070407 oxidation-dependent protein catabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013949 Utp6 9 95
No external refs found!