AT4G20050 (QRT3)

Aliases : QRT3

Description : Pectin lyase-like superfamily protein

Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G20050

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00255270	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AMTR_s00102p00131940	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and...	0.04	OrthoFinder output from all 47 species
AMTR_s03255p00000400	QRT3,...	Cell wall.pectin.modification and...	0.03	OrthoFinder output from all 47 species
Aop_g35331	QRT3	polygalacturonase *(QRT3) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g67503	QRT3	polygalacturonase *(QRT3) & original description: none	0.11	OrthoFinder output from all 47 species
Azfi_s0006.g010377	QRT3	polygalacturonase *(QRT3) & original description: CDS=62-1624	0.07	OrthoFinder output from all 47 species
Cba_g53005	QRT3	polygalacturonase *(QRT3) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.15G061400.1	QRT3, Ceric.15G061400	polygalacturonase *(QRT3) & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.21G028400.1	QRT3, Ceric.21G028400	polygalacturonase *(QRT3) & original description:...	0.05	OrthoFinder output from all 47 species
Dcu_g16097	QRT3	polygalacturonase *(QRT3) & original description: none	0.09	OrthoFinder output from all 47 species
Dde_g31759	QRT3	polygalacturonase *(QRT3) & original description: none	0.14	OrthoFinder output from all 47 species
GSVIVT01012139001	QRT3	Cell wall.pectin.modification and...	0.11	OrthoFinder output from all 47 species
LOC_Os04g52320.1	QRT3, LOC_Os04g52320	polygalacturonase (QRT3)	0.05	OrthoFinder output from all 47 species
Len_g58007	QRT3	polygalacturonase *(QRT3) & original description: none	0.06	OrthoFinder output from all 47 species
Len_g58008	QRT3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_739517g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_917578g0010	QRT3	polygalacturonase (QRT3)	0.04	OrthoFinder output from all 47 species
Msp_g12922	QRT3	polygalacturonase *(QRT3) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g44003	QRT3	polygalacturonase *(QRT3) & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g29972	QRT3	polygalacturonase *(QRT3) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g26325	QRT3	polygalacturonase *(QRT3) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g13886	QRT3	polygalacturonase *(QRT3) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g40884	No alias	polygalacturonase *(QRT3) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g068400.3.1	QRT3, Solyc02g068400	polygalacturonase (QRT3)	0.16	OrthoFinder output from all 47 species
Spa_g33866	QRT3	polygalacturonase *(QRT3) & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g38130	QRT3	polygalacturonase *(QRT3) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g43106	QRT3	polygalacturonase *(QRT3) & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g44469	QRT3	polygalacturonase *(QRT3) & original description: none	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009556	microsporogenesis	IMP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010208	pollen wall assembly	None	Extended
BP	GO:0010584	pollen exine formation	IMP	Interproscan
BP	GO:0010584	pollen exine formation	RCA	Interproscan
BP	GO:0010927	cellular component assembly involved in morphogenesis	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0010152	pollen maturation	IEP	HCCA
MF	GO:0015645	fatty acid ligase activity	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0030638	polyketide metabolic process	IEP	HCCA
BP	GO:0030639	polyketide biosynthetic process	IEP	HCCA
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
BP	GO:0035384	thioester biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0080110	sporopollenin biosynthetic process	IEP	HCCA
MF	GO:0090439	tetraketide alpha-pyrone synthase activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901568	fatty acid derivative metabolic process	IEP	HCCA
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024535	Pectate_lyase_SF_prot	78	298

External Links

No external refs found!

AT4G20050 (QRT3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation