AT4G09730 (RH39)

Aliases : RH39

Description : RH39

Gene families : OG0007220 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007220_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G09730
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00161460	RH39,...	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Adi_g006743	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g15873	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0006.g009538	RH39	23S-rRNA maturation helicase *(RH39) & original...	0.05	OrthoFinder output from all 47 species
Cba_g02647	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.10G018800.1	RH39, Ceric.10G018800	23S-rRNA maturation helicase *(RH39) & original...	0.07	OrthoFinder output from all 47 species
Cre01.g033832	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Dcu_g14154	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g26269	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g40877	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g15141	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01013702001	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.17	OrthoFinder output from all 47 species
Gb_33379	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
LOC_Os01g08930.1	RH39, LOC_Os01g08930	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Len_g18944	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.04	OrthoFinder output from all 47 species
MA_12327g0010	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
Mp5g09580.1	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
Nbi_g37282	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g04468	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g14534	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g52270	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001993	RH39	23S-rRNA maturation helicase *(RH39) & original...	0.02	OrthoFinder output from all 47 species
Sam_g26028	No alias	23S-rRNA maturation helicase *(RH39) & original description: none	0.02	OrthoFinder output from all 47 species
Smo86079	RH39	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc12g056740.2.1	RH39, Solyc12g056740	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.18	OrthoFinder output from all 47 species
Spa_g05661	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g19260	RH39	23S-rRNA maturation helicase *(RH39) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e029916_P001	RH39, Zm00001e029916	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa...	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	IMP	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IDA	Interproscan
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070180	large ribosomal subunit rRNA binding	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080158	obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901259	chloroplast rRNA processing	IMP	Interproscan
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009295	nucleoid	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009508	plastid chromosome	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
CC	GO:0010006	Toc complex	IEP	HCCA
BP	GO:0010020	chloroplast fission	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031359	obsolete integral component of chloroplast outer membrane	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
CC	GO:0031897	Tic complex	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
CC	GO:0042646	plastid nucleoid	IEP	HCCA
BP	GO:0042780	tRNA 3'-end processing	IEP	HCCA
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043572	plastid fission	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045037	protein import into chloroplast stroma	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	354	466
IPR011545	DEAD/DEAH_box_helicase_dom	136	319

External Links

No external refs found!

AT4G09730 (RH39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation