AT2G39670

Description : Radical SAM superfamily protein

Gene families : OG0001131 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001131_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G39670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00171240	evm_27.TU.AmTr_v1...	No description available	0.06	OrthoFinder output from all 47 species
Adi_g114284	No alias	RlmN-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g09088	No alias	RlmN-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01756	No alias	RlmN-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g12635	No alias	RlmN-type rRNA methyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g01100	No alias	RlmN-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.08G040900.1	Ceric.08G040900	RlmN-type rRNA methyltransferase & original description:...	0.05	OrthoFinder output from all 47 species
Cre02.g109250	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dac_g14671	No alias	RlmN-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01123	No alias	RlmN-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g07853	No alias	RlmN-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007579001	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01016561001	No alias	No description available	0.13	OrthoFinder output from all 47 species
GSVIVT01020239001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_41070	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os01g45370.1	LOC_Os01g45370	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os01g74190.1	LOC_Os01g74190	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Len_g09691	No alias	RlmN-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06989	No alias	RlmN-type rRNA methyltransferase & original description: none	0.06	OrthoFinder output from all 47 species
Mp1g04510.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g12660.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g21043	No alias	RlmN-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g14699	No alias	RlmN-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28734	No alias	RlmN-type rRNA methyltransferase & original description: none	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025527	No alias	RlmN-type rRNA methyltransferase & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g13128	No alias	RlmN-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Smo85220	No alias	No description available	0.06	OrthoFinder output from all 47 species
Solyc05g005590.4.1	Solyc05g005590	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc06g030570.3.1	Solyc06g030570	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045036	protein targeting to chloroplast	RCA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000095	S-adenosyl-L-methionine transmembrane transporter activity	IEP	HCCA
BP	GO:0000470	maturation of LSU-rRNA	IEP	HCCA
BP	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	HCCA
BP	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	HCCA
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006788	heme oxidation	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009501	amyloplast	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010024	phytochromobilin biosynthetic process	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015695	organic cation transport	IEP	HCCA
BP	GO:0015805	S-adenosyl-L-methionine transport	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032544	plastid translation	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051202	phytochromobilin metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007197	rSAM	172	335

External Links

No external refs found!

AT2G39670

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation