AT2G27100 (SE)

Aliases : SE

Description : C2H2 zinc-finger protein SERRATE (SE)

Gene families : OG0003096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G27100
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Aev_g09208	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.04	OrthoFinder output from all 47 species
Als_g04823	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Als_g26903	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G039000.1	SE, Ceric.03G039000	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.02	OrthoFinder output from all 47 species
Dac_g03821	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.04	OrthoFinder output from all 47 species
Dcu_g14201	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
GSVIVT01027348001	SE	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
Gb_07577	SE	C2H2 zinc finger transcription factor. component SERRATE...	0.03	OrthoFinder output from all 47 species
Gb_07578	SE	C2H2 zinc finger transcription factor. component SERRATE...	0.02	OrthoFinder output from all 47 species
Msp_g00688	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.04	OrthoFinder output from all 47 species
Ore_g36418	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.02	OrthoFinder output from all 47 species
Ppi_g62657	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Sam_g16645	No alias	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.02	OrthoFinder output from all 47 species
Spa_g54768	SE	component *(SERRATE) of DCL1-HYL1 miRNA biogenesis...	0.03	OrthoFinder output from all 47 species
Zm00001e013155_P002	SE, Zm00001e013155	C2H2 zinc finger transcription factor. component SERRATE...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IMP	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	IMP	Interproscan
CC	GO:0010445	nuclear dicing body	IDA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IDA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
BP	GO:0031053	primary miRNA processing	IMP	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035196	miRNA processing	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048367	shoot system development	IMP	Interproscan
BP	GO:0048509	regulation of meristem development	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000011	regulation of adaxial/abaxial pattern formation	IMP	Interproscan
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004815	aspartate-tRNA ligase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010450	inflorescence meristem growth	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035266	meristem growth	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048448	stamen morphogenesis	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048832	specification of plant organ number	IEP	HCCA
BP	GO:0048833	specification of floral organ number	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021933	SERRATE/Ars2_N	199	280
IPR007042	SERRATE/Ars2_C	436	630

External Links

No external refs found!

AT2G27100 (SE)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation