AT1G63480

Description : AT hook motif DNA-binding family protein

Gene families : OG0000263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000263_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G63480

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00254660	evm_27.TU.AmTr_v1...	AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT2G45850	No alias	AT hook motif DNA-binding family protein	0.03	OrthoFinder output from all 47 species
AT4G22770	No alias	AT hook motif DNA-binding family protein	0.05	OrthoFinder output from all 47 species
Adi_g012278	ATAHL1, AHL1	AHL clade-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g010299	ATAHL1, AHL1	AHL clade-B transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0029.g024083	ATAHL1, AHL1	AHL clade-B transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0159.g053950	No alias	AHL clade-B transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.16G069600.1	Ceric.16G069600	AHL clade-B transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.34G016000.1	Ceric.34G016000	AHL clade-B transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.38G025900.1	Ceric.38G025900	AHL clade-B transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g22593	No alias	AHL clade-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01013426001	No alias	AT-hook motif nuclear-localized protein 10...	0.06	OrthoFinder output from all 47 species
GSVIVT01027617001	ATAHL1, AHL1	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os10g42230.2	LOC_Os10g42230	AT-hook motif nuclear-localized protein 10...	0.05	OrthoFinder output from all 47 species
Len_g18915	No alias	AHL clade-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g20725	ATAHL1, AHL1	AHL clade-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10434727g0010	No alias	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_19947g0030	ATAHL1, AHL1	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_359293g0010	No alias	AT-hook motif nuclear-localized protein 10...	0.03	OrthoFinder output from all 47 species
Msp_g08536	No alias	AHL clade-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01003	No alias	AHL clade-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g008030.3.1	Solyc08g008030	AT-hook motif nuclear-localized protein 5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc08g079630.3.1	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc09g008940.4.1	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc12g094710.2.1	Solyc12g094710	AT-hook motif nuclear-localized protein 10...	0.04	OrthoFinder output from all 47 species
Spa_g45097	No alias	AHL clade-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g51610	No alias	AHL clade-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002444_P001	Zm00001e002444	AT-hook motif nuclear-localized protein 10...	0.07	OrthoFinder output from all 47 species
Zm00001e009148_P001	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e013520_P002	ATAHL1, AHL1,...	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e037798_P002	Zm00001e037798	AT-hook motif nuclear-localized protein 10...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	RCA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
MF	GO:0008810	cellulase activity	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010148	transpiration	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030155	regulation of cell adhesion	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
MF	GO:0031386	protein tag	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0048281	inflorescence morphogenesis	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000027	regulation of animal organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005175	PPC_dom	162	275

External Links

No external refs found!

AT1G63480

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation