Aliases : RACK1B_AT
Description : receptor for activated C kinase 1B
Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G48630 | |
Cluster | HCCA: Cluster_121 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00105p00058690 | RACK1B_AT,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.11 | OrthoFinder output from all 47 species | |
AT1G18080 | ATARCA, RACK1A, RACK1A_AT | Transducin/WD40 repeat-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
Adi_g098685 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Ala_g12720 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Als_g08943 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Als_g32831 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Als_g59033 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g00477 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.13 | OrthoFinder output from all 47 species | |
Aop_g06871 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.13 | OrthoFinder output from all 47 species | |
Azfi_s0113.g045894 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.16 | OrthoFinder output from all 47 species | |
Azfi_s0230.g059177 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15920 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g27545 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.02G088700.1 | RACK1C_AT,... | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.17 | OrthoFinder output from all 47 species | |
Ceric.34G016800.1 | RACK1C_AT,... | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000169.6 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.1 | OrthoFinder output from all 47 species | |
Cre06.g278222 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder output from all 47 species | |
Dac_g14184 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
GSVIVT01008395001 | MYB4R1, AtMYB4R1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder output from all 47 species | |
Gb_33900 | RACK1B_AT | associated component RACK1 of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os01g49290.1 | RACK1C_AT, LOC_Os01g49290 | associated component RACK1 of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
LOC_Os05g47890.1 | RACK1C_AT, LOC_Os05g47890 | associated component RACK1 of SSU proteome | 0.08 | OrthoFinder output from all 47 species | |
Lfl_g05286 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
MA_10435947g0010 | RACK1B_AT | Guanine nucleotide-binding protein subunit beta-like... | 0.13 | OrthoFinder output from all 47 species | |
Mp3g15630.1 | RACK1C_AT | associated component RACK1 of SSU proteome | 0.21 | OrthoFinder output from all 47 species | |
Msp_g08733 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
Nbi_g06103 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g06109 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Pir_g12442 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g46221 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g04455 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g25423 | RACK1B_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g33109 | RID3 | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g19034 | No alias | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Sam_g19035 | No alias | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
Smo266532 | RACK1C_AT | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.18 | OrthoFinder output from all 47 species | |
Solyc03g119040.3.1 | RACK1B_AT, Solyc03g119040 | associated component RACK1 of SSU proteome | 0.15 | OrthoFinder output from all 47 species | |
Solyc06g069010.3.1 | RACK1B_AT, Solyc06g069010 | associated component RACK1 of SSU proteome | 0.18 | OrthoFinder output from all 47 species | |
Solyc12g040510.2.1 | RACK1B_AT, Solyc12g040510 | associated component RACK1 of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Spa_g01709 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.12 | OrthoFinder output from all 47 species | |
Spa_g16013 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.13 | OrthoFinder output from all 47 species | |
Spa_g25398 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.17 | OrthoFinder output from all 47 species | |
Spa_g25399 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.14 | OrthoFinder output from all 47 species | |
Tin_g04974 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
Tin_g45000 | RACK1C_AT | component *(RACK1) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Zm00001e026456_P001 | RACK1C_AT, Zm00001e026456 | associated component RACK1 of SSU proteome | 0.25 | OrthoFinder output from all 47 species | |
Zm00001e032340_P001 | RACK1C_AT, Zm00001e032340 | associated component RACK1 of SSU proteome | 0.21 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | ISS | Interproscan |
BP | GO:0001510 | RNA methylation | RCA | Interproscan |
CC | GO:0005634 | nucleus | IDA | Interproscan |
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
BP | GO:0006417 | regulation of translation | IGI | Interproscan |
BP | GO:0009165 | nucleotide biosynthetic process | RCA | Interproscan |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | RCA | Interproscan |
BP | GO:0009664 | plant-type cell wall organization | RCA | Interproscan |
BP | GO:0009845 | seed germination | IGI | Interproscan |
CC | GO:0022626 | cytosolic ribosome | IDA | Interproscan |
BP | GO:0042254 | ribosome biogenesis | IGI | Interproscan |
BP | GO:0042545 | cell wall modification | RCA | Interproscan |
BP | GO:0048364 | root development | IGI | Interproscan |
BP | GO:0048367 | shoot system development | IGI | Interproscan |
BP | GO:0071215 | cellular response to abscisic acid stimulus | IEP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000741 | karyogamy | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | HCCA |
MF | GO:0004152 | dihydroorotate dehydrogenase activity | IEP | HCCA |
MF | GO:0004588 | orotate phosphoribosyltransferase activity | IEP | HCCA |
MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005244 | voltage-gated monoatomic ion channel activity | IEP | HCCA |
MF | GO:0005253 | monoatomic anion channel activity | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
CC | GO:0005739 | mitochondrion | IEP | HCCA |
CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
CC | GO:0005742 | mitochondrial outer membrane translocase complex | IEP | HCCA |
CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | HCCA |
BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006479 | protein methylation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
BP | GO:0006626 | protein targeting to mitochondrion | IEP | HCCA |
BP | GO:0006820 | monoatomic anion transport | IEP | HCCA |
BP | GO:0006839 | mitochondrial transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0006997 | nucleus organization | IEP | HCCA |
BP | GO:0007000 | nucleolus organization | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0008213 | protein alkylation | IEP | HCCA |
MF | GO:0008308 | voltage-gated monoatomic anion channel activity | IEP | HCCA |
MF | GO:0008320 | protein transmembrane transporter activity | IEP | HCCA |
MF | GO:0008509 | monoatomic anion transmembrane transporter activity | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009112 | nucleobase metabolic process | IEP | HCCA |
BP | GO:0009116 | nucleoside metabolic process | IEP | HCCA |
BP | GO:0009314 | response to radiation | IEP | HCCA |
BP | GO:0009416 | response to light stimulus | IEP | HCCA |
BP | GO:0009560 | embryo sac egg cell differentiation | IEP | HCCA |
BP | GO:0009639 | response to red or far red light | IEP | HCCA |
BP | GO:0009640 | photomorphogenesis | IEP | HCCA |
BP | GO:0009791 | post-embryonic development | IEP | HCCA |
BP | GO:0009853 | photorespiration | IEP | HCCA |
BP | GO:0009909 | regulation of flower development | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
MF | GO:0015450 | protein-transporting ATPase activity | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
CC | GO:0015935 | small ribosomal subunit | IEP | HCCA |
MF | GO:0016018 | cyclosporin A binding | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016289 | CoA hydrolase activity | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016571 | histone methylation | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
MF | GO:0016763 | pentosyltransferase activity | IEP | HCCA |
MF | GO:0016790 | thiolester hydrolase activity | IEP | HCCA |
BP | GO:0017126 | nucleologenesis | IEP | HCCA |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | HCCA |
CC | GO:0022625 | cytosolic large ribosomal subunit | IEP | HCCA |
CC | GO:0022627 | cytosolic small ribosomal subunit | IEP | HCCA |
MF | GO:0022832 | voltage-gated channel activity | IEP | HCCA |
MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | HCCA |
BP | GO:0030154 | cell differentiation | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0030686 | 90S preribosome | IEP | HCCA |
CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
MF | GO:0033218 | amide binding | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0034968 | histone lysine methylation | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | HCCA |
MF | GO:0042277 | peptide binding | IEP | HCCA |
BP | GO:0042991 | obsolete transcription factor import into nucleus | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043094 | cellular metabolic compound salvage | IEP | HCCA |
CC | GO:0043233 | organelle lumen | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048284 | organelle fusion | IEP | HCCA |
BP | GO:0048580 | regulation of post-embryonic development | IEP | HCCA |
BP | GO:0048831 | regulation of shoot system development | IEP | HCCA |
BP | GO:0048869 | cellular developmental process | IEP | HCCA |
BP | GO:0050793 | regulation of developmental process | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051170 | import into nucleus | IEP | HCCA |
BP | GO:0051239 | regulation of multicellular organismal process | IEP | HCCA |
BP | GO:0051302 | regulation of cell division | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:0098799 | outer mitochondrial membrane protein complex | IEP | HCCA |
MF | GO:0140318 | protein transporter activity | IEP | HCCA |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
BP | GO:2000026 | regulation of multicellular organismal development | IEP | HCCA |
BP | GO:2000241 | regulation of reproductive process | IEP | HCCA |
No external refs found! |