AT1G48630 (RACK1B_AT)


Aliases : RACK1B_AT

Description : receptor for activated C kinase 1B


Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G48630
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 RACK1B_AT,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.08 OrthoFinder output from all 47 species
Adi_g098685 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g12720 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g08943 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g32831 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g59033 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aop_g00477 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Aop_g06871 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Azfi_s0113.g045894 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Azfi_s0230.g059177 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g15920 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g27545 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.02G088700.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Ceric.34G016800.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.6 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Cre06.g278222 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Dac_g14184 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01008395001 MYB4R1, AtMYB4R1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Gb_33900 RACK1B_AT associated component RACK1 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os01g49290.1 RACK1C_AT, LOC_Os01g49290 associated component RACK1 of SSU proteome 0.14 OrthoFinder output from all 47 species
LOC_Os05g47890.1 RACK1C_AT, LOC_Os05g47890 associated component RACK1 of SSU proteome 0.08 OrthoFinder output from all 47 species
Lfl_g05286 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_10435947g0010 RACK1B_AT Guanine nucleotide-binding protein subunit beta-like... 0.13 OrthoFinder output from all 47 species
Mp3g15630.1 RACK1C_AT associated component RACK1 of SSU proteome 0.21 OrthoFinder output from all 47 species
Msp_g08733 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g06103 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g06109 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pir_g12442 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g46221 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g04455 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g25423 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g33109 RID3 component *(RACK1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g19034 No alias component *(RACK1) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Sam_g19035 No alias component *(RACK1) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Smo266532 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Solyc03g119040.3.1 RACK1B_AT, Solyc03g119040 associated component RACK1 of SSU proteome 0.15 OrthoFinder output from all 47 species
Solyc06g069010.3.1 RACK1B_AT, Solyc06g069010 associated component RACK1 of SSU proteome 0.18 OrthoFinder output from all 47 species
Solyc12g040510.2.1 RACK1B_AT, Solyc12g040510 associated component RACK1 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g01709 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Spa_g16013 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Spa_g25398 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Spa_g25399 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Tin_g04974 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Tin_g45000 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e026456_P001 RACK1C_AT, Zm00001e026456 associated component RACK1 of SSU proteome 0.25 OrthoFinder output from all 47 species
Zm00001e032340_P001 RACK1C_AT, Zm00001e032340 associated component RACK1 of SSU proteome 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006417 regulation of translation IGI Interproscan
BP GO:0009165 nucleotide biosynthetic process RCA Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
BP GO:0009845 seed germination IGI Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis IGI Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
BP GO:0048364 root development IGI Interproscan
BP GO:0048367 shoot system development IGI Interproscan
BP GO:0071215 cellular response to abscisic acid stimulus IEP Interproscan
Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004152 dihydroorotate dehydrogenase activity IEP HCCA
MF GO:0004588 orotate phosphoribosyltransferase activity IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
MF GO:0016018 cyclosporin A binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0017126 nucleologenesis IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 226 261
IPR001680 WD40_repeat 10 44
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 96 133
IPR001680 WD40_repeat 295 321
IPR001680 WD40_repeat 137 179
IPR001680 WD40_repeat 187 221
No external refs found!