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Description : component *(LHCq) of LHC-II complex & original description: none
Gene families : OG0006405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006405_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pnu_g08686 | |
| Cluster | HCCA: Cluster_96 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00112770 | evm_27.TU.AmTr_v1... | Photosynthesis.photophosphorylation.photosystem... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G76570 | No alias | Chlorophyll A-B binding family protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g044529 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g00780 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g20424 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.10G013700.1 | Ceric.10G013700 | component *(LHCq) of LHC-II complex & original... | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g14212 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g04287 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01013450001 | No alias | Photosynthesis.photophosphorylation.photosystem... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os09g12540.1 | LOC_Os09g12540 | component LHCq of LHC-II complex | 0.04 | OrthoFinder output from all 47 species | |
| Len_g11645 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g10372 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02997 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g00398 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g02034 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g11969 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g39906 | No alias | component *(LHCq) of LHC-II complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e033739_P001 | Zm00001e033739 | component LHCq of LHC-II complex | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 149 | 324 |
| No external refs found! |