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  5. Cba_g38272

Cba_g38272 (ATGCN5, GCN5)


Aliases : ATGCN5, GCN5

Description : not classified & original description: none


Gene families : OG0003045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g38272

Target Alias Description ECC score Gene Family Method Actions
AT5G64840 ATGCN5, GCN5 general control non-repressible 5 0.04 OrthoFinder output from all 47 species
Adi_g057121 ATGCN5, GCN5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g12591 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04195 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g16234 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g02291 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07329 ATGCN5, GCN5 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene62480.t1 ATGCN5, GCN5,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0168.g054635 ATGCN5, GCN5 not classified & original description: CDS=239-2245 0.03 OrthoFinder output from all 47 species
Ceric.29G008900.1 ATGCN5, GCN5,... not classified & original description: pacid=50624672... 0.07 OrthoFinder output from all 47 species
Cre06.g265100 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre08.g372250 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g12683 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g28626 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g07651 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_01082 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_01083 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os11g39020.1 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g07903 ATGCN5, GCN5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10437027g0010 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g14610 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11528 ATGCN5, GCN5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30372 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09728 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11340 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g15434 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020515 ATGCN5, GCN5 not classified & original description: CDS=75-2189 0.03 OrthoFinder output from all 47 species
Sam_g19383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g051800.3.1 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g18685 ATGCN5, GCN5 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e011297_P001 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 137 312
IPR003439 ABC_transporter-like_ATP-bd 466 596
IPR032781 ABC_tran_Xtn 352 438
No external refs found!