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  5. Sam_g51397

Sam_g51397


Description : not classified & original description: none


Gene families : OG0001451 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001451_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51397

Target Alias Description ECC score Gene Family Method Actions
AT5G46070 No alias Guanylate-binding family protein 0.03 OrthoFinder output from all 47 species
Aob_g42924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056605 No alias not classified & original description: CDS=339-3572 0.03 OrthoFinder output from all 47 species
Cba_g32097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000955.23 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g05791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g01230.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g008950.3.1 Solyc10g008950 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g12395 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013971_P003 Zm00001e013971 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!