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  5. Sam_g48669

Sam_g48669


Description : histidine-tRNA ligase & original description: none


Gene families : OG0005510 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g48669
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00192910 ATHRS1, HRS1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Ala_g02925 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03283 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G065200.1 ATHRS1, HRS1,... histidine-tRNA ligase & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g22376 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24921 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025735001 ATHRS1, HRS1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
LOC_Os02g51830.1 ATHRS1, HRS1,... histidine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Nbi_g14195 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g119280.3.1 ATHRS1, HRS1,... histidine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Spa_g06700 ATHRS1, HRS1 histidine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004150 dihydroneopterin aldolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004154 Anticodon-bd 439 527
IPR041715 HisRS-like_core 110 414
No external refs found!