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  5. Sam_g37245

Sam_g37245


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g37245

Target Alias Description ECC score Gene Family Method Actions
Adi_g012590 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.04 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.02 OrthoFinder output from all 47 species
Dac_g16300 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09268 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g15440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01887 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08780 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08308 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006174 No alias not classified & original description: CDS=16-1263 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 361
IPR002885 Pentatricopeptide_repeat 211 238
IPR002885 Pentatricopeptide_repeat 387 416
IPR002885 Pentatricopeptide_repeat 284 310
IPR002885 Pentatricopeptide_repeat 419 468
No external refs found!