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  5. Sam_g27577

Sam_g27577


Description : plastidial splicing factor *(PDM3) & original description: none


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27577

Target Alias Description ECC score Gene Family Method Actions
Cba_g23160 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.02 OrthoFinder output from all 47 species
Dac_g06633 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16308 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01032591001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Mp1g24450.1 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Ore_g40651 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Spa_g10723 No alias plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 508 536
IPR002885 Pentatricopeptide_repeat 475 496
IPR002885 Pentatricopeptide_repeat 335 362
IPR002885 Pentatricopeptide_repeat 442 469
IPR002885 Pentatricopeptide_repeat 543 572
IPR002885 Pentatricopeptide_repeat 251 311
IPR002885 Pentatricopeptide_repeat 182 241
IPR002885 Pentatricopeptide_repeat 368 415
IPR002885 Pentatricopeptide_repeat 122 167
No external refs found!