Sam_g18921

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g18921

Target	Alias	Description	ECC score	Gene Family Method
AT1G28360	ATERF12, ERF12	ERF domain protein 12	0.03	OrthoFinder output from all 47 species
Adi_g009324	ATERF12, ERF12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g036158	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g044380	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g056295	ERF110	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060064	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g072233	RAP2.6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g14600	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ala_g10901	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g09855	ORA47	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Als_g20918	ORA47	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Aob_g30583	LEP	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene07603.t1	DEAR1, CEJ1,...	subgroup ERF-II transcription factor *(ERF19/20) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17041.t1	Aspi01Gene17041	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene23221.t1	Aspi01Gene23221	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48121.t1	Aspi01Gene48121	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene49723.t1	HRE2, Aspi01Gene49723	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Aspi01Gene49728.t1	HRE2, Aspi01Gene49728	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene68341.t1	ATERF-9, ERF9,...	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene70904.t1	Aspi01Gene70904	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06839	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.2	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g02023	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g08064	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g23088	No alias	subgroup ERF-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g28249	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01025461001	RAP2.11	External stimuli response.biotic...	0.02	OrthoFinder output from all 47 species
LOC_Os05g41780.1	ATERF-9, ERF9,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os09g20350.1	RAP2.4, LOC_Os09g20350	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Lfl_g23751	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g30898	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
MA_8552524g0010	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Ore_g32986	No alias	subgroup ERF-I transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g28144	DDF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g39319	No alias	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pnu_g14155	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pnu_g18571	AtERF48, DREB2C	subgroup ERF-IV/DREB2 transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pp3c5_11150V3.1	Pp3c5_11150	Integrase-type DNA-binding superfamily protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004888	No alias	not classified & original description: CDS=1-1152	0.02	OrthoFinder output from all 47 species
Sam_g15306	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc03g093560.1.1	Solyc03g093560	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Solyc09g075420.3.1	HRE2, Solyc09g075420	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc12g038440.1.1	HRE2, Solyc12g038440	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g22552	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000689_P001	Zm00001e000689	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	90	138

External Links

No external refs found!

Sam_g18921

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation