1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g17762

Sam_g17762


Description : SSU processome assembly factor *(RRP9/YAO1) & original description: none


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17762

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.06 OrthoFinder output from all 47 species
Aop_g07802 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.04 OrthoFinder output from all 47 species
Ceric.23G029700.1 EMB2271, Ceric.23G029700 SSU processome assembly factor *(RRP9/YAO1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.21 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre06.g278175 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g01492 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01021618001 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Gb_41592 YAO SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g42770.1 YAO, LOC_Os03g42770 SSU processome assembly factor (RRP9/YAO1) 0.06 OrthoFinder output from all 47 species
Len_g28722 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g19119 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.02 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.04 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.07 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.04 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e005033_P001 YAO, Zm00001e005033 SSU processome assembly factor (RRP9/YAO1) 0.06 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 328 363
IPR001680 WD40_repeat 289 323
IPR001680 WD40_repeat 246 282
IPR001680 WD40_repeat 217 240
No external refs found!