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  5. Sam_g15740

Sam_g15740


Description : lysine-tRNA ligase & original description: none


Gene families : OG0005865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15740
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Adi_g081278 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21504 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15254.t1 OVA5, ATKRS-2,... lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15256.t1 OVA5, ATKRS-2,... lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23209 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G049100.1 OVA5, ATKRS-2,... lysine-tRNA ligase & original description:... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.1 OVA5, ATKRS-2 No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.2 OVA5, ATKRS-2 Lysine--tRNA ligase, chloroplastic/mitochondrial... 0.01 OrthoFinder output from all 47 species
Dac_g21585 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11670 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01025473001 OVA5, ATKRS-2 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
Gb_05325 OVA5, ATKRS-2 lysine-tRNA ligase 0.05 OrthoFinder output from all 47 species
LOC_Os02g41470.3 OVA5, ATKRS-2,... lysine-tRNA ligase 0.04 OrthoFinder output from all 47 species
Len_g27813 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g09810.1 OVA5, ATKRS-2 lysine-tRNA ligase 0.07 OrthoFinder output from all 47 species
Ore_g15615 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03084 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g30430 OVA5, ATKRS-2 lysine-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006285_P003 OVA5, ATKRS-2,... lysine-tRNA ligase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004364 Aa-tRNA-synt_II 238 604
IPR004365 NA-bd_OB_tRNA 142 220
No external refs found!