Sam_g13786

Description : not classified & original description: none

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13786

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00168540	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH1, mitochondrial...	0.03	OrthoFinder output from all 47 species
AT1G65070	No alias	DNA mismatch repair protein MutS, type 2	0.03	OrthoFinder output from all 47 species
Adi_g084420	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g09056	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04468	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11010	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g24484	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cre01.g040350	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g11218	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g00918	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12779	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01038675001	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.02	OrthoFinder output from all 47 species
LOC_Os04g58410.1	LOC_Os04g58410	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os10g36530.1	LOC_Os10g36530	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Len_g03377	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g57835	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_263724g0010	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp2g00480.1	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Mp2g11550.1	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.03	OrthoFinder output from all 47 species
Nbi_g26063	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g15710	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19502	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16765	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g59488	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo421325	No alias	No description available	0.02	OrthoFinder output from all 47 species
Spa_g47688	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004820	glycine-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR046893	MSSS	756	797
IPR000432	DNA_mismatch_repair_MutS_C	462	646

External Links

No external refs found!

Sam_g13786

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation