Sam_g12494

Description : not classified & original description: none

Gene families : OG0006427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006427_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g12494

Target	Alias	Description	ECC score	Gene Family Method
AT1G12770	ISE1, EMB1586	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
Adi_g059267	ISE1, EMB1586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11392	ISE1, EMB1586	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.18G072800.1	ISE1, EMB1586,...	not classified & original description: pacid=50621729...	0.02	OrthoFinder output from all 47 species
Dcu_g20575	ISE1, EMB1586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g16936	ISE1, EMB1586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g42406.1	ISE1, EMB1586,...	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os03g12000.1	ISE1, EMB1586,...	DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Len_g13791	ISE1, EMB1586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g40933	ISE1, EMB1586	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g16530.1	ISE1, EMB1586	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Pir_g05565	ISE1, EMB1586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g12947	ISE1, EMB1586	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g10294	ISE1, EMB1586	not classified & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003951	NAD+ kinase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006741	NADP biosynthetic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	425	523
IPR011545	DEAD/DEAH_box_helicase_dom	138	353

External Links

No external refs found!

Sam_g12494

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation