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  5. Sam_g10050

Sam_g10050


Description : not classified & original description: none


Gene families : OG0004008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10050
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00115980 ATAB2,... Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT3G08010 ATAB2 RNA binding 0.08 OrthoFinder output from all 47 species
Adi_g014503 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07833 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09787 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22462 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04128 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04239 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02871 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31544 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene49930.t1 ATAB2, Aspi01Gene49930 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61715.t1 ATAB2, Aspi01Gene61715 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03154 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.21G068300.1 ATAB2, Ceric.21G068300 not classified & original description: pacid=50604093... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000622.21 No alias Protein TAB2 homolog, chloroplastic OS=Zea mays 0.02 OrthoFinder output from all 47 species
Cre17.g702500 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g18139 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18747 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04344 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16983 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05805 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032129001 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_34984 ATAB2 Protein TAB2 homolog, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os02g39740.1 ATAB2, LOC_Os02g39740 Protein TAB2 homolog, chloroplastic OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g18822 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43889 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30744 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10430622g0010 ATAB2 Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Nbi_g00688 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g01898 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05869 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02783 ATAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g10236 ATAB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g12443 ATAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03703 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32398 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015277 ATAB2 not classified & original description: CDS=173-1390 0.03 OrthoFinder output from all 47 species
Tin_g00858 ATAB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10787 ATAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015079_P001 ATAB2, Zm00001e015079 Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046760 Tab2-like_N 131 180
IPR046761 Tab2-like_C 190 404
No external refs found!