Aob_g08433 (ATCUL3A, ATCUL3, CUL3A, CUL3)

Aliases : ATCUL3A, ATCUL3, CUL3A, CUL3

Description : scaffold component *(CUL3) of CUL3-BTB E3 ligase complexes & original description: none

Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g08433
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AT1G69670	CUL3B, ATCUL3B	cullin 3B	0.03	OrthoFinder output from all 47 species
Aev_g12058	ATCUL3A, ATCUL3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07404	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Aspi01Gene12486.t1	ATCUL4, CUL4,...	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Azfi_s0233.g059433	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000157.111	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g10487	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Dcu_g13417	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
GSVIVT01020008001	ATCUL3A, ATCUL3,...	Cullin-3A OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os03g57290.1	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Len_g07971	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Lfl_g02234	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
MA_36374g0010	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana (sp\|q8lgh4\|cul4_arath : 352.0)	0.02	OrthoFinder output from all 47 species
MA_7251626g0010	CUL3B, ATCUL3B	Cullin-3B OS=Arabidopsis thaliana (sp\|q9c9l0\|cul3b_arath : 114.0)	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005063	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Sam_g09683	No alias	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sam_g13649	No alias	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Solyc01g010820.3.1	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.02	OrthoFinder output from all 47 species
Zm00001e005919_P001	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Zm00001e015820_P001	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
CC	GO:0030906	retromer, cargo-selective complex	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	30	633
IPR019559	Cullin_neddylation_domain	665	727

External Links

No external refs found!

Aob_g08433 (ATCUL3A, ATCUL3, CUL3A, CUL3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation