Aliases : VALRS, TWN2
Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none
Gene families : OG0001685 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001685_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Dde_g26392 | |
Cluster | HCCA: Cluster_26 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00038p00088230 | VALRS, TWN2,... | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.02 | OrthoFinder output from all 47 species | |
AT1G14610 | VALRS, TWN2 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | 0.02 | OrthoFinder output from all 47 species | |
AT5G16715 | EMB2247 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g054739 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g11536 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.05 | OrthoFinder output from all 47 species | |
Aob_g02362 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene49069.t1 | EMB2247, Aspi01Gene49069 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0114.g046119 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.08G062000.1 | EMB2247, Ceric.08G062000 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.12G097300.1 | VALRS, TWN2,... | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001130.5 | VALRS, TWN2 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.01 | OrthoFinder output from all 47 species | |
Cre07.g350500 | EMB2247 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.02 | OrthoFinder output from all 47 species | |
Cre12.g537100 | VALRS, TWN2 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g38949 | EMB2247 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01030776001 | EMB2247 | Valine--tRNA ligase, chloroplastic/mitochondrial 2... | 0.01 | OrthoFinder output from all 47 species | |
LOC_Os03g48850.1 | VALRS, TWN2,... | valine-tRNA ligase | 0.03 | OrthoFinder output from all 47 species | |
Len_g18059 | EMB2247 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Len_g32324 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g08398 | EMB2247 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
MA_583090g0010 | VALRS, TWN2 | Valine--tRNA ligase, mitochondrial 1 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g01242 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g33649 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g10604 | No alias | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.04 | OrthoFinder output from all 47 species | |
Smo141956 | VALRS, TWN2 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.05 | OrthoFinder output from all 47 species | |
Solyc09g007540.3.1 | VALRS, TWN2,... | valine-tRNA ligase | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g019100.2.1 | EMB2247, Solyc12g019100 | Valine--tRNA ligase, chloroplastic/mitochondrial 2... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g05237 | VALRS, TWN2 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.06 | OrthoFinder output from all 47 species | |
Tin_g31146 | EMB2247 | EC_6.1 ligase forming carbon-oxygen bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e010301_P002 | VALRS, TWN2,... | valine-tRNA ligase | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e040160_P001 | VALRS, TWN2,... | valine-tRNA ligase | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | Interproscan |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
MF | GO:0008374 | O-acyltransferase activity | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
MF | GO:0016421 | CoA carboxylase activity | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |