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  5. Dde_g04414

Dde_g04414


Description : ubiquitin-binding adaptor *(UFD3) & original description: none


Gene families : OG0004990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004990_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g04414
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre09.g389912 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Dcu_g03029 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031913001 No alias Dynein assembly factor with WDR repeat domains 1... 0.03 OrthoFinder output from all 47 species
Len_g53943 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11013 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36601 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Smo98884 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder output from all 47 species
Spa_g51839 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24732 No alias ubiquiTin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e032747_P004 Zm00001e032747 ubiquitin-binding adaptor (UFD3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013535 PUL_dom 492 755
IPR015155 PFU 338 446
IPR001680 WD40_repeat 178 214
IPR001680 WD40_repeat 14 44
IPR001680 WD40_repeat 260 291
IPR001680 WD40_repeat 100 135
IPR001680 WD40_repeat 138 175
No external refs found!