Dde_g02079

Description : component *(uL3c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0005291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005291_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g02079
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AT2G43030	No alias	Ribosomal protein L3 family protein	0.05	OrthoFinder output from all 47 species
Adi_g022051	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g03365	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g26780	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.08G072800.1	Ceric.08G072800	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre48.g761197	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dac_g08147	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g02623	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01019355001	No alias	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea	0.04	OrthoFinder output from all 47 species
Gb_26251	No alias	component psRPL3 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os02g04460.1	LOC_Os02g04460	component psRPL3 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Len_g00379	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Lfl_g10299	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10432831g0010	No alias	component psRPL3 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Mp1g03320.1	No alias	component psRPL3 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Msp_g02349	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g00713	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pp3c16_1020V3.1	Pp3c16_1020	Ribosomal protein L3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c6_28830V3.1	Pp3c6_28830	Ribosomal protein L3 family protein	0.02	OrthoFinder output from all 47 species
Sam_g11021	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g38828	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g051200.3.1	Solyc06g051200	component psRPL3 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Spa_g05012	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	171	258

External Links

No external refs found!

Dde_g02079

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation