1. Home
  2. Species
  3. Amblovenatum opulentum
  4. Sequence
  5. Aop_g41657

Aop_g41657


Description : not classified & original description: none


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g41657

Target Alias Description ECC score Gene Family Method Actions
Adi_g075755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103931 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.03 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.04 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g24624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g18833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g26171 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009589 No alias not classified & original description: CDS=346-2226 0.02 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 238 309
IPR000504 RRM_dom 143 201
IPR029123 RBM39_linker 329 436
No external refs found!