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  5. Lfl_g12599

Lfl_g12599 (ATPRFB, HCF109)


Aliases : ATPRFB, HCF109

Description : translation peptide chain release factor *(PrfB) & original description: none


Gene families : OG0002101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12599
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00184560 ATPRFB, HCF109,... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Ala_g01893 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.05 OrthoFinder output from all 47 species
Als_g37106 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23943.t1 ATPRFB, HCF109,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0252.g060375 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.03 OrthoFinder output from all 47 species
Cba_g23243 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.02 OrthoFinder output from all 47 species
Ceric.36G013000.1 ATPRFB, HCF109,... translation peptide chain release factor *(PrfB) &... 0.03 OrthoFinder output from all 47 species
Cre01.g010864 ATPRFB, HCF109 Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dac_g33031 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.01 OrthoFinder output from all 47 species
Dcu_g09191 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.09 OrthoFinder output from all 47 species
Len_g16720 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.02 OrthoFinder output from all 47 species
MA_10437191g0010 ATPRFB, HCF109 PrfB-type translation peptide chain release factor 0.05 OrthoFinder output from all 47 species
Ore_g03628 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.02 OrthoFinder output from all 47 species
Pir_g63203 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002336 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.04 OrthoFinder output from all 47 species
Sam_g51819 No alias translation peptide chain release factor *(PrfB) &... 0.03 OrthoFinder output from all 47 species
Solyc04g025290.4.1 ATPRFB, HCF109,... PrfB-type translation peptide chain release factor 0.05 OrthoFinder output from all 47 species
Spa_g09555 ATPRFB, HCF109 translation peptide chain release factor *(PrfB) &... 0.06 OrthoFinder output from all 47 species
Zm00001e031540_P002 Zm00001e031540 PrfB-type translation peptide chain release factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006415 translational termination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000352 Pep_chain_release_fac_I 312 420
IPR005139 PCRF 111 301
No external refs found!