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  5. Aop_g21243

Aop_g21243


Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0002186 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002186_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g21243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00114p00128980 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT3G11560 No alias LETM1-like protein 0.02 OrthoFinder output from all 47 species
Aev_g03407 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G026100.1 Ceric.02G026100 not classified & original description: pacid=50585185... 0.07 OrthoFinder output from all 47 species
Dac_g20534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01930 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os08g37610.1 LOC_Os08g37610 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g09198 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10431582g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10435533g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_116156g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g02540.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g10486 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004147 No alias not classified & original description: CDS=213-2903 0.02 OrthoFinder output from all 47 species
Smo403300 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc09g010280.3.1 Solyc09g010280 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e003387_P005 Zm00001e003387 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 36 82
No external refs found!