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  5. Aop_g21103

Aop_g21103


Description : translation termination factor *(eRF3) & original description: none


Gene families : OG0004213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004213_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g21103

Target Alias Description ECC score Gene Family Method Actions
Ala_g10914 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Ceric.02G096500.1 Ceric.02G096500 translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g284750 No alias Protein biosynthesis.translation termination.eRF3... 0.02 OrthoFinder output from all 47 species
Dcu_g06375 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os04g20220.1 LOC_Os04g20220 eRF3 peptide release factor 0.03 OrthoFinder output from all 47 species
Len_g35299 No alias translation termination factor *(eRF3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g34425 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
MA_10429223g0010 No alias Elongation factor 1-alpha OS=Vicia faba... 0.04 OrthoFinder output from all 47 species
Msp_g06356 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Ore_g15705 No alias translation termination factor *(eRF3) & original... 0.02 OrthoFinder output from all 47 species
Pir_g16691 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Smo115313 No alias Protein biosynthesis.translation termination.eRF3... 0.04 OrthoFinder output from all 47 species
Spa_g00747 No alias translation termination factor *(eRF3) & original... 0.04 OrthoFinder output from all 47 species
Tin_g11299 No alias translation termination factor *(eRF3) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e040640_P002 Zm00001e040640 eRF3 peptide release factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 449 560
IPR000795 T_Tr_GTP-bd_dom 134 346
IPR004161 EFTu-like_2 377 444
No external refs found!